PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G12110.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 275aa    MW: 29385.2 Da    PI: 6.5066
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G12110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.6e-061091491155
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  OBART11G12110.1 109 VRREKISERMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 149
                      6******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.41498148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13108165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-5108154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-13108166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-8110153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVNFPQSPEP GTKAKKCKLS ADAAGDEDTK PVAGDAGHGG NGKGKVLDAA GEPPKDYIHV  60
RARRGQATDS HSLAERVNAA GVYAAIHNFV FSSILAFADA IAAVFHLQVR REKISERMKL  120
LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLS TVNPQLDFDV DNFIPKDAND  180
PSMPAPLSLP PPPPPLSYSP EGASPGICYA SSQGTAMQSV VTSTKHLETA PTFANHHVIP  240
VPSLDGFHSA HSQAGSCMWE DDLQSVVQMG FRGNT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615633.11e-150transcription factor BHLH089-like isoform X2
TrEMBLA0A0D3HLE00.0A0A0D3HLE0_9ORYZ; Uncharacterized protein
STRINGOBART11G12110.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.19e-48bHLH family protein