PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART11G05830.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 396aa    MW: 44533.6 Da    PI: 10.0005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART11G05830.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.31.4e-1824113198
                      EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      ff vl++    ++ r+ +p +f  ++ ++++++  +++l d+sg++W+ +l  +  s+++++  GWkeFv++n ++ g f+vF++d+rs+f   
  OBART11G05830.1  24 FFRVLLT--LQSLERMKIPSSFN-QClQNQPTG--MVSLVDRSGNKWSAEL--TSDSEGFFFVHGWKEFVRDNSIQCGQFLVFTYDKRSQF--S 108
                      5666633..4456679******8.564767666..8***************..*********************************99999..8 PP

                      EEEE- CS
               B3  94 vkvfr 98 
                      v+vf+
  OBART11G05830.1 109 VTVFE 113
                      88876 PP
2B352.49.8e-17290381398
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++++ s+v     + +p +f++e+   ++++k +tl d++g+ Wev++ y   ++   +++GW +F+  n+L+  D++vF+l+++++   +v++
  OBART11G05830.1 290 QIMMESYVYVGFFMNIPCEFVRECL--PRTNKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDN--IKVHI 379
                      6789999999**************5..345678***************995555556799*********************998444..57887 PP

                      E- CS
               B3  97 fr 98 
                      +r
  OBART11G05830.1 380 YR 381
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100179.01E-1822112No hitNo description
PROSITE profilePS5086314.77622115IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-2223119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-2123115IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.1E-1524115IPR003340B3 DNA binding domain
PfamPF023621.4E-1631112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-26280381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-25281381IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-23286381No hitNo description
PROSITE profilePS5086313.352288383IPR003340B3 DNA binding domain
SMARTSM010195.0E-15288383IPR003340B3 DNA binding domain
PfamPF023626.9E-15290381IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGKGKGKGKG KEKEGDINCF GRSFFRVLLT LQSLERMKIP SSFNQCLQNQ PTGMVSLVDR  60
SGNKWSAELT SDSEGFFFVH GWKEFVRDNS IQCGQFLVFT YDKRSQFSVT VFEPSGIDKI  120
STFSAHPSKN VIIKTESDEG GMVTAAITTE KMAPALKENN GITGKRTRDV DYLMEDRVVV  180
FKKSSEANVC ESSRRKRAGA SAGKSKVTST SHNSTRGSSC SSDEDNSSSK SPNPPFLMRF  240
LSGEVSRRGV SKGQRQLTVI SQRRPVTEAE KDHALQRARE FKSKNPFAVQ IMMESYVYVG  300
FFMNIPCEFV RECLPRTNKR ITLWDPQGKA WEVNYVYYSD RSVGSFSGGW GKFAVGNNLE  360
KFDVCVFELV QKDNIKVHIY RVVPEITPHK LRSDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1326138222142B3 domain-containing transcription factor VRN1
4i1k_B3e-1326138222142B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019410.0AK101941.1 Oryza sativa Japonica Group cDNA clone:J033074I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615373.10.0B3 domain-containing protein Os11g0197600
SwissprotQ2R9D20.0Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0D3HJ800.0A0A0D3HJ80_9ORYZ; Uncharacterized protein
STRINGOBART11G05830.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-19B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]