PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART11G04950.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 294aa MW: 32128.1 Da PI: 8.1457

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART11G04950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k G g+W++ ++ g+ R++k+c++rw +yl OBART11G04950.1 14 KGAWTKEEDQRLIAYIKANGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	60.8	2.8e-19	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ OBART11G04950.1 67 RGNFTEEEDELIIKLHELLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.466	9	61	IPR017930	Myb domain
SMART	SM00717	8.8E-13	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.22E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	2.3E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.83E-10	16	61	No hit	No description
PROSITE profile	PS51294	29.51	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-18	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-17	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	3.75E-14	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010224	Biological Process	response to UV-B
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0090378	Biological Process	seed trichome elongation
GO:1903086	Biological Process	negative regulation of sinapate ester biosynthetic process
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK ANGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHELLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 VDPQTHRPLN AAADHHQQQQ LQAPRRFAAA PAGHHHHHPD HFAVLSNSPE ACSHSSDDEP 180 SSATPPPPPR HLGIDLNLSI SLAPYQPQDQ TSEPMKQEDD EASATANGAG NAAMTTTATT 240 AAVCLCLNRL GLHGGEVCSC GRGGAPSMQA STHMFRFITP LGGGHHNSSS TTMT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-29	14	116	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.
UniProt	Transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00479	DAP	Transfer from AT4G38620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012619	0.0	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615594.1	1e-178	myb-related protein 308
Swissprot	P81393	3e-89	MYB08_ANTMA; Myb-related protein 308
Swissprot	P81395	5e-89	MYB30_ANTMA; Myb-related protein 330
TrEMBL	A0A0D3HIX5	0.0	A0A0D3HIX5_9ORYZ; Uncharacterized protein
STRING	OBART11G04950.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-87	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]