PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART11G03800.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 229aa MW: 25834.2 Da PI: 11.8285 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31.1 | 3.9e-10 | 142 | 179 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + OBART11G03800.3 142 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 179 665559******************************98 PP | |||||||
2 | BELL | 76.9 | 3.1e-25 | 1 | 48 | 15 | 62 |
BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFr 62 +l+eV++rY+qy++q+q+v++sFeavag gsa+ Yt+lAl++iSr+Fr OBART11G03800.3 1 MLDEVEQRYRQYHQQMQVVVASFEAVAGGGSARTYTALALRTISRQFR 48 9**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 1.2E-22 | 1 | 48 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 120 | 183 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.78E-12 | 123 | 184 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 123 | 187 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-18 | 124 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-29 | 126 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.0E-19 | 140 | 179 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MLDEVEQRYR QYHQQMQVVV ASFEAVAGGG SARTYTALAL RTISRQFRWS SGTGSTTGRC 60 RGWRRRSRRR RGPGRRRLTR RWRCAPSHGG CGRTVGSRLR YIDHQLRQQR ALQQLGMMQS 120 SAWRPQRGLP ERSVSILRAW LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS NWFINARVRL 180 WKPMVEEMYL EETKDQDGGG GGAGDEGSKP GGSKGGGAGV NGGVNVKSE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 129 | 187 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 129 | 187 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-17 | 129 | 186 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-17 | 129 | 186 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 3e-17 | 129 | 187 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-17 | 129 | 187 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 63 | 76 | RRRSRRRRGPGRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK354639 | 1e-133 | AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02. | |||
GenBank | AK355078 | 1e-133 | AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22. | |||
GenBank | AK366536 | 1e-133 | AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18. | |||
GenBank | AK374345 | 1e-133 | AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616922.1 | 6e-94 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616923.1 | 6e-94 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616924.1 | 6e-94 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015616925.1 | 6e-94 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SIW1 | 7e-75 | BLH7_ARATH; BEL1-like homeodomain protein 7 | ||||
Swissprot | Q9SJ56 | 6e-74 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A0D3HIH1 | 1e-166 | A0A0D3HIH1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G03800.1 | 1e-167 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-65 | BEL1-like homeodomain 6 |
Publications ? help Back to Top | |||
---|---|---|---|
|