PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G03590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 283aa MW: 31516 Da PI: 7.2295 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 90.4 | 1.4e-28 | 38 | 129 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ g ++ l++ede g W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ OBART11G03590.1 38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 129 99****************************9666678899************************************************7642 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-41 | 32 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.03E-30 | 35 | 130 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.17E-27 | 37 | 131 | No hit | No description |
SMART | SM01019 | 1.3E-21 | 38 | 144 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.774 | 38 | 144 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.3E-26 | 38 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA 60 ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD 120 VVHFERVRGS FGVGDRLFIG CRRRGDTAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS 180 TSGGGSYPTS PANSYAYRAA DHDHGDMHHA DESPRDTDSP SFSAGSAPSR RLRLFGVNLD 240 CGPEPEADTT AAATMYGYMH QQSSYAAMSA VPRAIHKKID YEI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-50 | 33 | 144 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-50 | 33 | 144 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070487 | 0.0 | AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615108.1 | 0.0 | B3 domain-containing protein Os11g0156000 | ||||
Swissprot | Q53QI0 | 0.0 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A0D3HIE5 | 0.0 | A0A0D3HIE5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G03590.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36080.2 | 1e-53 | B3 family protein |
Publications ? help Back to Top | |||
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