PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART11G03530.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 295aa MW: 31235.8 Da PI: 6.5128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART11G03530.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133.2	1.8e-41	18	149	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ vd+y ++P++L + + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+ OBART11G03530.1 18 TPGFRFYPTEEELLGFYLRHRLAGTRADVERVIPVVDVYGYHPSQLAAvageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSC 111 69*************************99***********84455333335569***************************999 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++ OBART11G03530.1 112 VISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 149 998868889*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-45	16	182	IPR003441	NAC domain
PROSITE profile	PS51005	45.649	17	183	IPR003441	NAC domain
Pfam	PF02365	1.2E-22	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MATTRSGGGG AISDPFATPG FRFYPTEEEL LGFYLRHRLA GTRADVERVI PVVDVYGYHP 60 SQLAAVAGEA SARDTEQWFF FCPRAERELH GGRPARTTPS GYWKATGSPS CVISSATNRV 120 IGVKRTMVFY QGRAPTGTKT RWKMNEYKAV ADDADAAAAA AMLHPMAPPR LRNELGVCRV 180 YISTGTLRSF DRRPLDNQAA APTQQQVMPS LTAAAAVNTN LCGGGGGVVF AGAQGDSSRD 240 CSSSSGSREL AGGADGSEDD AIDWNSLISS ATADDLGFNT VVGFDPSIVG SWPQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	19	150	19	143	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	19	150	19	143	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	19	150	19	143	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	19	150	19	143	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	19	150	22	146	NAC domain-containing protein 19
3swm_B	1e-28	19	150	22	146	NAC domain-containing protein 19
3swm_C	1e-28	19	150	22	146	NAC domain-containing protein 19
3swm_D	1e-28	19	150	22	146	NAC domain-containing protein 19
3swp_A	1e-28	19	150	22	146	NAC domain-containing protein 19
3swp_B	1e-28	19	150	22	146	NAC domain-containing protein 19
3swp_C	1e-28	19	150	22	146	NAC domain-containing protein 19
3swp_D	1e-28	19	150	22	146	NAC domain-containing protein 19
4dul_A	1e-28	19	150	19	143	NAC domain-containing protein 19
4dul_B	1e-28	19	150	19	143	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109939	0.0	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615861.1	0.0	NAC domain-containing protein 90
Swissprot	Q9FMR3	5e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D3HID7	0.0	A0A0D3HID7_9ORYZ; Uncharacterized protein
STRING	OBART11G03530.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	6e-65	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]