PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G02570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 161aa MW: 18213.9 Da PI: 10.9295 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 94.9 | 1.3e-29 | 50 | 150 | 277 | 374 |
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpL 367 +++ er+ vEr+llg+ei+ vvacegaer+erhe++++W +r+e++G++ v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL OBART11G02570.1 50 AAAAERARVERVLLGEEIRGVVACEGAERVERHERARQWAARMEAVGMERVGLSYSGAMEARKLLQSCGWAGpYEVRHDagGHGFFFCWHKRPL 143 45689****************************************************************8888****884345678******** PP GRAS 368 vsvSaWr 374 ++v+aWr OBART11G02570.1 144 YAVTAWR 150 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.15 | 1 | 127 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-27 | 50 | 150 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MRIETLREQG MRRLPPAVLE LEASLLDLGM AAGGEQRSWV RFREKRRSAA AAAERARVER 60 VLLGEEIRGV VACEGAERVE RHERARQWAA RMEAVGMERV GLSYSGAMEA RKLLQSCGWA 120 GPYEVRHDAG GHGFFFCWHK RPLYAVTAWR PAASRRGHTR S |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC123527 | 0.0 | AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence. | |||
GenBank | AC151480 | 0.0 | AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence. | |||
GenBank | AP014967 | 0.0 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616659.1 | 9e-75 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0D3HI19 | 1e-109 | A0A0D3HI19_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G02570.1 | 1e-109 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25542 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-24 | scarecrow-like 3 |