PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART11G00370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 872aa MW: 94720.2 Da PI: 7.4041 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96 | 2.9e-30 | 612 | 665 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ OBART11G00370.1 612 PRLRWTPELHLSFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 665 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01103 | 5.0E-21 | 177 | 488 | IPR000184 | Bacterial surface antigen (D15) |
PROSITE profile | PS51294 | 11.92 | 608 | 668 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 608 | 666 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-14 | 609 | 666 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.1E-22 | 611 | 667 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.9E-8 | 613 | 664 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0019867 | Cellular Component | outer membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 872 aa Download sequence Send to blast |
MATASSPASV QDYPDLQEDD DDDFQDDDDL DDEDKEDDDD QEPSPSPSDE ARLQSVLRRL 60 TAEEVRIRVH DVEIRGCCRT RRAAVEAAVG SDLPRAATVR DLVRAAAAAA DRIRRLGAFD 120 TVSITLDAAP PGIPGNAAVI VLVDVAEARG RAAGELGIFA NKGTRSCSVQ GSVKLKNLFG 180 YCETWDASGD LGLDQTVELS TGVAIPRIGA IPTPLVARIS FLSEDWLKSS LREHMMGVSV 240 GLLSTMNHNL AYNLSWRTIT DRALMSSNSI RGQLGHSLLS SIKYAYKVDQ RDSRIRPTRG 300 YAYLFSSQVG GLAPESKDAR YIRQELDLRV ALPLGVLNGA LNAGVAAGII HPLARGSTGS 360 ISPLSEQFYL GGNRSLMCRL GGPSSLLGFK KRGLGTDLQS STPENSENVA STSPELSARG 420 GDIAVTAFAD LSFDIPLKPL RELGIHGHAF VSAGNLAKLT EPDLRKFPLA EFLQTFRSSA 480 GFGVVVPTRL FRIEVLKKSS NVFLQVQVRQ PATMFDKPPN SVIQLFKRCS RISSNKTTRV 540 HHQAKLAKAI ESWPAGKEEE EEDGGGGAPA AAANNYGSST TSSTTEEEGS GESRRRTSSS 600 SSVRPYVRSK NPRLRWTPEL HLSFVRAVDR LGGQDRATPK LVLQLMNVRG LSIGHVKSHL 660 QMYRSKKIDE SGQVIGGESW RSDDHLQMQG GGHGGQAYNL GHLSLPALHH RSITAGSGTI 720 FQSRFGNLWS PWRCHGSYWL PAGHHLLVGS KPYYPPAAEA EAPFRRSSSR YVARANTSNH 780 PDFVQGSSSS PDDHIMNHQR PVLKEMICSE GSNHQEGPLN LDLSLDICPR GEKRKRECSW 840 RKKEEDHDHA TVAIGGDQEA ESCATGLSLS LF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-18 | 613 | 667 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-18 | 613 | 667 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-18 | 613 | 667 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-18 | 613 | 667 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066650 | 0.0 | AK066650.1 Oryza sativa Japonica Group cDNA clone:J013071M22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617112.1 | 0.0 | uncharacterized protein LOC4349555 | ||||
Refseq | XP_015617113.1 | 0.0 | uncharacterized protein LOC4349555 | ||||
Refseq | XP_015617114.1 | 0.0 | uncharacterized protein LOC4349555 | ||||
Refseq | XP_025877044.1 | 0.0 | uncharacterized protein LOC4349555 | ||||
Refseq | XP_025877045.1 | 0.0 | uncharacterized protein LOC4349555 | ||||
TrEMBL | A0A0D3HH71 | 0.0 | A0A0D3HH71_9ORYZ; Uncharacterized protein | ||||
STRING | OBART11G00370.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-36 | G2-like family protein |