PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G19000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 706aa    MW: 78090 Da    PI: 5.7383
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G19000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.48.4e-592533731121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  OBART10G19000.1 253 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 345
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  OBART10G19000.1 346 RYPFLEAYSKPIRCISRNRTSRPLGSAK 373
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.85E-736173IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555503.98E-5623692IPR000980SH2 domain
PROSITE profilePS500019.366630706IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSASGERESG TKPSPPPTSR SAAARPPMAA PPGRGGADGY CDLPDVRLEL DPGKVRGGGG  60
GFTVCFWLYL SSSARPSSVI LHQVAEGGGD KVPFLALGEG NKLILFPLLG FHREAPTPDS  120
SYPWTDITNL TEVNECPLDN WFHVGCEVTE NIMRLHIDGD LVAETHLHSL YNEPDYQDDA  180
NQINLLGSKD KLEGYVYNME LSCMLGNIQQ QFAKNPPFKL SIDYSCSDGI EEGDDGIWNI  240
VGGKASCRRN FILEVILVDA FGEAAKDREI VASLVYADNG ALVEKSRDDS EPPLLISCDG  300
IEYPAVSRPL PIIRGRALFK LKISQLSSKC DNKLFRIFFS TLGMKRYPFL EAYSKPIRCI  360
SRNRTSRPLG SAKRIGSASM DDIQSINNCE GFGHSGKANG RLQTHDPSSV VCFHPSKFSK  420
IEDDVQKTSS QNKHAKKMVL DKGAQDVMVS DSTASDYDSM DAGSSWSLSD GDDVESFSDA  480
EIFRYCLDGT HERSKFLRAA APSVNEDDLI KLANQVSLYS GCTHHRNQIL ISKQLLQEGA  540
DIWSIISKNN ERALWSSAVP EMKAKFLEIV HPSNRGLSEQ DFEVLRGIAG CGDDIGRDEF  600
DKLWSWLYPV AIALSKDKIN RLWDFTAHRW IEGLITLQET ENALRSSRDR LMKPGTFVLR  660
FPTTRSWPHP DAGSLVVTYV GSDNSIHHRL LSLDVRVDRL PSSMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0D3HGR70.0A0A0D3HGR7_9ORYZ; Uncharacterized protein
STRINGOBART10G19000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-145SH2 domain protein B