PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART10G18190.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 215aa MW: 23731.1 Da PI: 9.7831 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.3 | 1e-16 | 31 | 76 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne Er+RRdriN+++ +L++l+P++ K +Ka++L ++++Y+k+Lq OBART10G18190.2 31 HNESERKRRDRINQKMKTLQKLVPNS-----SKTDKASMLDEVIDYLKQLQ 76 *************************8.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 18.025 | 26 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-20 | 29 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-18 | 31 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-14 | 31 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.79E-17 | 31 | 80 | No hit | No description |
SMART | SM00353 | 1.2E-18 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MCDEDEHVVI RGEGAMRSSI STKRSRAAAI HNESERKRRD RINQKMKTLQ KLVPNSSKTD 60 KASMLDEVID YLKQLQAQVQ VMSRMGSMMM PMGMAMPQLQ MSVMAQMAQM AQIGLSMMNM 120 GQAGGYAPMH MHTPPFLPVS WDAAASSSSA AAADRPPQPT GAATSDAFSA FLASQAAQQN 180 AQQPNGMEAY NRMMAMYQKL NHQQQQQDQP SNSRQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 39 | ERKRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287925 | 0.0 | AK287925.1 Oryza sativa Japonica Group cDNA, clone: J065218F01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612716.1 | 1e-114 | transcription factor UNE10 isoform X1 | ||||
Refseq | XP_015612717.1 | 1e-114 | transcription factor UNE10 isoform X1 | ||||
Swissprot | Q8GZ38 | 1e-38 | UNE10_ARATH; Transcription factor UNE10 | ||||
TrEMBL | A0A0D3HGI0 | 1e-155 | A0A0D3HGI0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QVU9 | 1e-152 | I1QVU9_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA10G0133200.1 | 1e-152 | (Oryza glaberrima) | ||||
STRING | OBART10G18190.2 | 1e-156 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7474 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 3e-31 | bHLH family protein |
Publications ? help Back to Top | |||
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