PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G16880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 565aa    MW: 60901.9 Da    PI: 7.1255
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G16880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.9e-093213581954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV +WF N R +
  OBART10G16880.1 321 FEHflHPYPSDVDKHILARQTGLSRSQVANWFINARVR 358
                      664459******************************88 PP
2BELL93.81.6e-30184254272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  OBART10G16880.1 184 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 254
                      5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-44117252IPR006563POX domain
PfamPF075265.5E-43123250IPR006563POX domain
PROSITE profilePS5007112.001299362IPR001356Homeobox domain
CDDcd000865.97E-12302363No hitNo description
SMARTSM003895.2E-9302366IPR001356Homeobox domain
SuperFamilySSF466893.64E-17303369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-27305368IPR009057Homeodomain-like
PfamPF059202.1E-17319358IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ HQQGVGVAEM FGVRGLMPAA HAHEQSKGVG  60
ALGELHHHQH RQSQAPLSLS LHRPEAAATS LLMQQQQQHL HHQPSPPAGA ASTWQLQQGA  120
WHLRGSRFLL PTQQLLQEFC SLPVKSTTSP SSASKATKQP QEEAAGGGGS SSWTAPTQIQ  180
SMDAAELQRL KGKLYTMLEE VDRRYRRYCE QMRALAASFE AVAGERAAAA YTRLASRTIS  240
RHFRSLRDGV VAQLQAVRKQ LGEKDTAVPG MTKGETPRLR VLDQCLRQHK AYQAGMLESH  300
PWRPQRGLPE RAVSILRAWL FEHFLHPYPS DVDKHILARQ TGLSRSQVAN WFINARVRLW  360
KPMVEEMYAE EMKDEEGSGQ STQASNPQNP HPSSYTSEVR GGGGGEDRGE QKPSRAQLLH  420
DAGSLASVVS IGHGGAGRTM VDHHHHQSLN FGMMDQLDFD SYEAAGGGQG FGAGGGVSLT  480
LGLQQQHADP HDGVNVAFAA AAAPPNSSGV AAEYLFMGGG GGGEHQQQLP QAAQFGAVME  540
GDAASHYRGL SATAAGFHLL HDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16308365158Homeobox protein Meis1
4xrs_B4e-16308365158Homeobox protein Meis1
5bng_A4e-16308366159Homeobox protein Meis2
5bng_B4e-16308366159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0D3HG070.0A0A0D3HG07_9ORYZ; Uncharacterized protein
STRINGOBART10G16880.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.25e-74BEL1-like homeodomain 2