PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART10G14710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 384aa MW: 41772.6 Da PI: 9.4126 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.7e-13 | 3 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+l+++ +++G g +W + + +g+ R++ +c+srw++yl OBART10G14710.1 3 KGKWSKEEDDLIKNHMEKYGIGrSWQALSDALGLQRCGRSCRSRWLNYL 51 79******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 32.1 | 2.7e-10 | 58 | 101 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g +++ E+ ++ + + G+ W++Ia+ ++ gRt+ +k++w++ OBART10G14710.1 58 GDFSPAEERIICKMYSKKGSS-WSAIAAQLP-GRTDLAVKNYWNST 101 679****************99.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.125 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-10 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.24E-24 | 2 | 98 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-12 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-19 | 4 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-8 | 5 | 51 | No hit | No description |
PROSITE profile | PS51294 | 14.578 | 56 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 6.4E-11 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-9 | 58 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 59 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-7 | 60 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MKKGKWSKEE DDLIKNHMEK YGIGRSWQAL SDALGLQRCG RSCRSRWLNY LRPGLKHGDF 60 SPAEERIICK MYSKKGSSWS AIAAQLPGRT DLAVKNYWNS TLKKRFPAAP AARSTAAARR 120 RHRPAASATT SSDDDDDVDV DDATPPGLAL VVYSEGSTAA AAAAGELAPT CILALPPPPP 180 PPPPSPSDAT GGEVSIPCFP FSPLPFIEPD LPELTWTTDL DDITATFDAA ACRYPKRPHP 240 ITPDSPRLPK LPAIAGFDDV QSFFICLRYN TSPFLLARAT AAPPAAAADR CLAGRRCLYS 300 TTPPPPLSPL HWRCSRRDPE LGADVSALLL RGRLGARQLF DELPHRVRWR RGYLRAAFAA 360 SVSNLNARDG HRGVKAEAMK SSAQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 1 | 106 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111394 | 0.0 | AK111394.1 Oryza sativa Japonica Group cDNA clone:002-182-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025876753.1 | 1e-109 | transcription factor MYB30-like | ||||
TrEMBL | A0A0D3HFA2 | 0.0 | A0A0D3HFA2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G14710.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12228 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 3e-40 | myb domain protein 87 |