PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G11350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 272aa    MW: 30182 Da    PI: 7.1481
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G11350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-2720106371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OBART10G11350.1  20 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpdnpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 106
                      689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.5E-1201272IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.7E-4414112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-3718106IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2421106IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.67E-2021107IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144584.21E-40111214IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.14E-41113245No hitNo description
SMARTSM011383.1E-69113270IPR014889Transcription factor DP, C-terminal
PfamPF087811.1E-39114241IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGKKKKRGPG TRATGPDKGG RGLRQFSMKV CEKVESKGRT TYNEVADELV AEFADPNNNF  60
ASPDPDNPNT PQFDEKNIRR RVYDALNVLM AMDIISKDKK EIQWKGLPRT SMSDVEELKT  120
EIIGLKGRID KKNAYLQELE DQFVGLQNLA QRNEQLYGSG NAPSGGVALP FILVQTRPHA  180
TVEVEISEDM QLVHFDFNST PFELHDDSFV LKALGFSGKE PDDTQARVGN GGECSTTPIY  240
HQSPQVARPN GVRLPTSPPI PGILKGRVKH EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3912111193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245510.0AY224551.1 Oryza sativa (japonica cultivar-group) isolate 26539 DP TF mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614876.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-123DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0D3HE330.0A0A0D3HE33_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0BAZ10.0A0A0E0BAZ1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ISI90.0A0A0E0ISI9_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QZL80.0A0A0E0QZL8_ORYRU; Uncharacterized protein
STRINGOGLUM10G11120.10.0(Oryza glumipatula)
STRINGORUFI10G11860.10.0(Oryza rufipogon)
STRINGONIVA10G10530.10.0(Oryza nivara)
STRINGOBART10G11350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP