PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART10G09450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 326aa    MW: 34562.2 Da    PI: 6.883
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART10G09450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof40.84.7e-1393121230
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPr 30 
                      ++k+l+cprC s++tkfCy+nny++s  r
  OBART10G09450.1  93 PDKILPCPRCSSMDTKFCYFNNYNVSSNR 121
                      7899********************99766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-1680121IPR003851Zinc finger, Dof-type
PfamPF027011.6E-995120IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGECRGGGGG GGGDGLIKLF GKTIPVQPDA KDVQQHSGSS SSSTESDVQE TAAVAVADPS  60
PRSEVVDGES PPQPGGEAAS HQQQQKEMKL KKPDKILPCP RCSSMDTKFC YFNNYNVSSN  120
RDDEQIGNTV AKPTNGLQQH PPPPPHHHHS AMNGGGIWPY YTSGIAIPIY PAAPAYWGCM  180
IPPPGAWSLP WPATVQSQAI SSSSPPTSAT PSVSSFTLGK HPREGGDHEA RDHHGNGKVW  240
VPKTIRIDNA DEVARSSIRS LFAFRGGDKA DDNNDDDGTG VHKLATTVFE PKRDGKTAKH  300
PAITSLPLLH TNPVALTRSA TFQEGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615013.11e-122cyclic dof factor 1
TrEMBLA0A0D3HDH60.0A0A0D3HDH6_9ORYZ; Uncharacterized protein
STRINGOBART10G09450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-14cycling DOF factor 2