PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART10G09210.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 176aa MW: 19876 Da PI: 10.3556 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.2 | 1.6e-19 | 48 | 165 | 2 | 112 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 +G+ F P+d el +k v g+ l++v+++++i++++P L+ + + +ee+ +yfF +r+ + + ++++++r++k g+Wka+g +k OBART10G09210.2 48 LVGCYFVPKDLELFAILRCKLVCGQLpGALNNVFEHIRILEFHPALLHeTYIGKEEDgYIYFFNRRQFAMKagNKRQPTRVAKGGTWKASGGSK 141 68************665555555555334456799************844555544435699999987665336778999************** PP NAM 91 evlsk..kgelvglkktLvfykgr 112 +v sk +g ++g k t++fy+ r OBART10G09210.2 142 TVRSKkvDGIDIGQKLTMMFYERR 165 ***98888888**********644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-23 | 42 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.801 | 47 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-8 | 49 | 164 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MSAWLPQLEI AAEQPPEGGG DGGGNNNGKW KGKEKVVPKH RKNRHGMLVG CYFVPKDLEL 60 FAILRCKLVC GQLPGALNNV FEHIRILEFH PALLHETYIG KEEDGYIYFF NRRQFAMKAG 120 NKRQPTRVAK GGTWKASGGS KTVRSKKVDG IDIGQKLTMM FYERRFEGDR NPIKTN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC083943 | 1e-125 | AC083943.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0044A10, from chromosome 10, complete sequence. | |||
GenBank | AP014966 | 1e-125 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651177.1 | 1e-90 | NAC transcription factor NAM-B2 isoform X1 | ||||
TrEMBL | A0A0D3HDE8 | 1e-128 | A0A0D3HDE8_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA10G08840.1 | 1e-100 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 1e-08 | NAC family protein |