PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G18940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 477aa    MW: 54401.8 Da    PI: 4.9525
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G18940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.43.3e-5461351128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v
  OBART09G18940.1   6 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 98 
                      79****************************.99**************84335556888************************************ PP

              NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl
  OBART09G18940.1  99 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 135
                      99978899***************************98 PP
2NAM173.46.9e-542663931128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv++yLk+kv+g +++l ++i+evd+yk+ePw+L+ k  + ++++ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++
  OBART09G18940.1 266 LPPGFRFHPTDEELVNYYLKRKVHGLSIDL-DIIPEVDLYKCEPWELEeKsFLPSKDSEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRRI 358
                      79****************************.99**************84345566899************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +++ +g+kktLv+ykgrap+g +t+Wvmheyr+
  OBART09G18940.1 359 NY-QNRSIGMKKTLVYYKGRAPQGIRTSWVMHEYRI 393
                      *9.8899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-634158IPR003441NAC domain
PROSITE profilePS5100560.8816158IPR003441NAC domain
PfamPF023652.9E-297135IPR003441NAC domain
SuperFamilySSF1019411.23E-62259416IPR003441NAC domain
PROSITE profilePS5100559.297266416IPR003441NAC domain
PfamPF023655.2E-29267393IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LAEKSFLPSR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVVH QHGGRAIGMK KTLVYYRGRA  120
PQGVRTDWVM HEYRLDDKDC EDTMPIQDTY ALCRVFKKNA ICTEVEELQG QCSMALLEGA  180
CQQLLASGGG GSQEQYETPS PPDVPVGSTS GGADADAEAE DDPDKDDSWM QFISDDAWCS  240
STADGGAEES TSCEEANWEA MAPVGLPPGF RFHPTDEELV NYYLKRKVHG LSIDLDIIPE  300
VDLYKCEPWE LEEKSFLPSK DSEWYFFGPR DRKYPNGCRT NRATRAGYWK STGKDRRINY  360
QNRSIGMKKT LVYYKGRAPQ GIRTSWVMHE YRIEESECEN AMGIQDSYAL CRIFKKNVVL  420
GEFDKKGECS SSQAKGNEEQ VTDFGDAGQS SGANENDKDN SWMQFIAEDL WCTNKLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52141710167NO APICAL MERISTEM PROTEIN
1ut4_B3e-52141710167NO APICAL MERISTEM PROTEIN
1ut7_A3e-52141710167NO APICAL MERISTEM PROTEIN
1ut7_B3e-52141710167NO APICAL MERISTEM PROTEIN
3swm_A3e-52141713170NAC domain-containing protein 19
3swm_B3e-52141713170NAC domain-containing protein 19
3swm_C3e-52141713170NAC domain-containing protein 19
3swm_D3e-52141713170NAC domain-containing protein 19
3swp_A3e-52141713170NAC domain-containing protein 19
3swp_B3e-52141713170NAC domain-containing protein 19
3swp_C3e-52141713170NAC domain-containing protein 19
3swp_D3e-52141713170NAC domain-containing protein 19
4dul_A3e-52141710167NAC domain-containing protein 19
4dul_B3e-52141710167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280591e-175KJ728059.1 Zea mays clone pUT6205 NAC transcription factor (NAC121) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612702.21e-172NAC domain-containing protein 86
SwissprotQ9FFI53e-85NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0D3H9T40.0A0A0D3H9T4_9ORYZ; Uncharacterized protein
STRINGOBART09G18940.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-113NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]