PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G15000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 1094aa    MW: 121117 Da    PI: 4.69
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G15000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.72.5e-454035352128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  ++++++k+w+fFs+ d+ky++g+r++r+t +gyWk+tgkd++++
  OBART09G15000.1 403 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKTTGKDRSIC 494
                      8*********************9999555..6**************9435778899************************************** PP

              NAM  94 sk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +       +g++vg kktLv+++grap+ge+tdWvmhey+l
  OBART09G15000.1 495 NGggggaaSGRAVGSKKTLVYHHGRAPRGERTDWVMHEYTL 535
                      *98877777777***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.3E-12289IPR001623DnaJ domain
SuperFamilySSF465651.83E-15398IPR001623DnaJ domain
SMARTSM002710.0078560IPR001623DnaJ domain
PROSITE profilePS5007613.07668IPR001623DnaJ domain
PfamPF002267.3E-9765IPR001623DnaJ domain
CDDcd062572.15E-8757IPR001623DnaJ domain
PRINTSPR006254.5E-10826IPR001623DnaJ domain
PRINTSPR006254.5E-104060IPR001623DnaJ domain
PRINTSPR006254.5E-106079IPR001623DnaJ domain
PfamPF143081.0E-46130319IPR026894DNAJ-containing protein, X-domain
SuperFamilySSF1019416.28E-51399558IPR003441NAC domain
PROSITE profilePS5100551.285402558IPR003441NAC domain
PfamPF023657.2E-24403535IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1094 aa     Download sequence    Send to blast
MVRETGYYDV LGVSPTATEV EIKKAYYMKG DHAFVLPHVA LRCFKNELGE AYQVLSDPTQ  60
RQAYDSYGKS GISTEAIIDP AAIFAMLFGS ELFEDYIGQL AMASMASLDI FGDEEEIDAR  120
MLQEKMRVVQ KEREEKLAET LKNKLHLYVQ GNKEEFVQFA EAEVSRLSNA AYGVDMLSTI  180
GYVYSRQAAK ELGKKAIYLG VPFIAEWFRN KGHYIKSQVT AATGAIALMQ LQEDLKKHLS  240
AECHYTEEEL EAYMETHKSV MVDSLWKLNV ADIEGTLSHV CQMVLQDSTI RREELRARAK  300
GLKTLGKIFQ RVKLGSSEGE VTTINNTINN SDDNDGSSPD SSPMSPREHP YDPNPPYYQP  360
EGVELTRHFA ISSRGCCASH QPIPAAAAEE SMPRTENPPL RWPPGFRFSP TDEELVLYFL  420
KRRIATGRPT PYIADVDVYK SHPSHLPERS ALRTGDKQWF FFSRMDRKYP NGSRASRTTG  480
EGYWKTTGKD RSICNGGGGG AASGRAVGSK KTLVYHHGRA PRGERTDWVM HEYTLLADAL  540
PPAARDREAY ALYKLFHKSG AGPKNGEQYG APFREEDWLD DDDHHHDQLP SEAALPAPAT  600
TSGRAATTEE HADFELPGGD LDVLLAQIEN DQDIIEAQLD FSTHVTSQVQ IQHRVHQGWL  660
SDDGGKSDVA DATTSGSALL MAENTCAELP IDGLEQLLMQ ISDDQQTVEM LSGFSASVPQ  720
SQLQHDDHQG CLGVHREEVG VADSTTVSSA VVTEECTVRE LQDIEGLLMQ IENDLENAES  780
LPDFSTPVHL HDCHQAAFGD FQGSQRATFN IANLSTMVQE SPNFDLQTGP SNQITESILT  840
TEPMNGETNA VEETSPLRSM SVLGSYDRQD GDDEFLEIND FFDPEDLEQI LGSTTSQNLI  900
PADDGVFDSL QYSDAPMFLP GSFDTTGVVA ENHYVEFGAS GIQNQGFQHT TELWAHNQVA  960
LNVRNHMKDN HVIFSHSSDA TIIHTVNEQP PNRSSYASQS WFNGALSALL DSVPSSPAMA  1020
AENIGLNRTL QRISSFRSQQ PAREEVSSTL INTRRRGGGL IFISLMVLLV AIMWTFSNGS  1080
AVKLSKGLWK FPST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-423945357140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685010.0AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
GenBankAK0992370.0AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611740.10.0NAC domain-containing protein 17 isoform X1
TrEMBLA0A0D3H8F60.0A0A0D3H8F6_9ORYZ; Uncharacterized protein
STRINGOBART09G15000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.14e-60NAC domain containing protein 16