PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART09G13850.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 458aa MW: 48781.8 Da PI: 7.3337 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.8 | 8.3e-18 | 186 | 235 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq OBART09G13850.4 186 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 235 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.32E-19 | 181 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-16 | 182 | 239 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-24 | 182 | 255 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.952 | 184 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-15 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-13 | 190 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ AFPGGIGTFS ISHVAGARPV 60 AAAVVKAEPT PFVLWGQPAA AAAAHPVAAL GHHHHHHQQW TLPFAGVGQV AATAARQQQE 120 RKGRVGGGGF MDSGSRSSGG AGFDDDDGVA ARREVSSSLK ELTVRVDGKG GSCSGSGTDQ 180 RPSSPRSKHS ATEQRRRSKI NDRFQILREL LPHSDQKRDK ATFLLEVIEY IRFLQEKVQK 240 FEASVPEWNQ ENAKILPWSK GQNPGDDLPD PSQFIRNGSS SGYNFTGKPD DNHNMVTSAA 300 ASGAQELVET DHAASVSYRS AETPTNITNN VTSRAQAQWA SPAGVDDCAM NSEMLNNQQL 360 AIDEGTISLS SQYSQQLLGT LTHALESSGV DLSQASISVQ INLGKRAVKR PGADGSSSSK 420 ELPSTSANNE NMGHQLTMLG GGTEELPYPT KRHKSGNS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071315 | 0.0 | AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence. | |||
GenBank | EU837261 | 0.0 | EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612524.1 | 0.0 | transcription factor BIM3 isoform X1 | ||||
TrEMBL | A0A0D3H816 | 0.0 | A0A0D3H816_9ORYZ; Uncharacterized protein | ||||
STRING | ORUFI09G14830.1 | 0.0 | (Oryza rufipogon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 2e-52 | BES1-interacting Myc-like protein 2 |