PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G13850.3
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 506aa    MW: 53680.3 Da    PI: 7.3832
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G13850.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.5e-18234283255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OBART09G13850.3 234 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 283
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-19229300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-24230303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-16230287No hitNo description
PROSITE profilePS5088816.952232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-15234283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP  60
ANAPPTPPHP SGAASALGAG GLAQQQQQAF PGGIGTFSIS HVAGARPVAA AVVKAEPTPF  120
VLWGQPAAAA AAHPVAALGH HHHHHQQWTL PFAGVGQVAA TAARQQQERK GRVGGGGFMD  180
SGSRSSGGAG FDDDDGVAAR REVSSSLKEL TVRVDGKGGS CSGSGTDQRP SSPRSKHSAT  240
EQRRRSKIND RFQILRELLP HSDQKRDKAT FLLEVIEYIR FLQEKVQKFE ASVPEWNQEN  300
AKILPWSKGQ NPGDDLPDPS QFIRNGSSSG YNFTGKPDDN HNMVTSAAAS GAQELVETDH  360
AASVSYRSAE TPTNITNNVT SRAQAQWASP AGVDDCAMNS EMLNNQQLAI DEGTISLSSQ  420
YSQQLLGTLT HALESSGVDL SQASISVQIN LGKRAVKRPG ADGSSSSKEL PSTSANNENM  480
GHQLTMLGGG TEELPYPTKR HKSGNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0transcription factor BIM3 isoform X1
TrEMBLA0A0D3H8150.0A0A0D3H815_9ORYZ; Uncharacterized protein
STRINGORUFI09G14830.10.0(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-52BES1-interacting Myc-like protein 2