PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G13850.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 1013aa    MW: 110212 Da    PI: 7.9988
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G13850.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.42.3e-17741790255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  OBART09G13850.2 741 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 790
                      889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513756.423362392IPR002885Pentatricopeptide repeat
PfamPF015350.42367393IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.591393427IPR002885Pentatricopeptide repeat
PfamPF015350.16395422IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.684516546IPR002885Pentatricopeptide repeat
PfamPF015350.0094521544IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0017521545IPR002885Pentatricopeptide repeat
PROSITE profilePS5137511.553549583IPR002885Pentatricopeptide repeat
PfamPF130412.1E-11549595IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.1E-7551584IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.366584619IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.974620650IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.59688718IPR002885Pentatricopeptide repeat
SuperFamilySSF474591.3E-18736807IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-23737810IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-16737794No hitNo description
PROSITE profilePS5088816.952739789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-15741790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13745795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1013 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP  60
ANAPPTPPHP SGAASALGAG GLAQQQQQAF PGGIGTFSIS HVAGARPVAA AVVKAEPTPF  120
VLWGQPAAAA AAHPVAALGH HHHHHQQWTL PFAGVGQVAA TAARQQQERK GRVGGGGFMD  180
SGSRSSGGAG FDDDDGVAAR REVSSSLKER RREGRGEEGR RRSRELMEME MEMYSRCARP  240
SHIHQLHARL VVSGRLRCTS PSLALALLRA ACRVRASPCL RPLAHHLLDH IPRPHPHLLH  300
AAARLAYRLR LPSLALRHYV ALRTHHPVFL PPAAAIADML KSVRGRAAHA HALRVTAHAG  360
DTRFLDNTLI AMYFACGDVQ RARLVFEGMC DRDVISWTSL ISGLVQNGSP LQGIQQFATM  420
MHCNVRPDFV VLVTIAKAFM ELDNLPGAES AHSLVVKGGF HDEQDVMITL TAMYASFGCL  480
VAARALFDMV PPQQLGSTEL AAWMEDCVCR SEYREDVLVN TALIDMYAKS GSISHARAVF  540
ERMHVDDRDV VVWSALITGY GVQGLVNEAC TLFQDMKLAG VRPNDVTFLG LLSACNHAGA  600
VEKGWSYFHS MKPDYGIEPQ HQHYACVVDL LSRAGQLDRA YQFILNMPIK PEMTVWGALL  660
HGCKMHGHSN MAMAECAAQH IFELEQSNAG HYVQLANMYA SAGMWSQVAG MRVTMRERVR  720
VDGKGGSCSG SGTDQRPSSP RSKHSATEQR RRSKINDRFQ ILRELLPHSD QKRDKATFLL  780
EVIEYIRFLQ EKVQKFEASV PEWNQENAKI LPWSKGQNPG DDLPDPSQFI RNGSSSGYNF  840
TGKPDDNHNM VTSAAASGAQ ELVETDHAAS VSYRSAETPT NITNNVTSRA QAQWASPAGV  900
DDCAMNSEML NNQQLAIDEG TISLSSQYSQ QLLGTLTHAL ESSGVDLSQA SISVQINLGK  960
RAVKRPGADG SSSSKELPST SANNENMGHQ LTMLGGGTEE LPYPTKRHKS GNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D4e-3234565417330PLS9-PPR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1018960.0AK101896.1 Oryza sativa Japonica Group cDNA clone:J033070P13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699577.10.0pentatricopeptide repeat-containing protein At3g12770
TrEMBLA0A0D3H8140.0A0A0D3H814_9ORYZ; Uncharacterized protein
STRINGOBART09G13850.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-50BES1-interacting Myc-like protein 2