PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G11390.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 400aa    MW: 43003.2 Da    PI: 4.5973
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G11390.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19139188255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  OBART09G11390.2 139 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 188
                      69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-32139197No hitNo description
Gene3DG3DSA:3.30.730.101.6E-32139197IPR001471AP2/ERF domain
SMARTSM003801.2E-36139202IPR001471AP2/ERF domain
PROSITE profilePS5103223.933139196IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22139197IPR016177DNA-binding domain
PRINTSPR003672.7E-11140151IPR001471AP2/ERF domain
PfamPF008476.7E-12140188IPR001471AP2/ERF domain
PRINTSPR003672.7E-11162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAAAAAAKKQ QGRRVTADVL WPGMLRKGKA AAAEEDFEAD  60
FREFERGMSD DEAEGGGGEE EEEEEDDVVV VVPPPAAARF VVRAAAKAAP PTADGMLTTK  120
LVQHDGPTAR SAKRKRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD  180
AEARKIRGKK AKVNFPDEPA VAQKLSLKQN AAKQEKLAPP LKTCGDDAFF QLNSSDNDLF  240
AMLAKVPSKP AEPVDLMPPV KPLASTETFE MNMLSDTSSN SFGSSDFGWE DDTLTPDYTS  300
VFVPNAAMPA YGEPAYLTGG APKRMRNNYG IAVPQGNGMP NLAQNMPTFD PEMKYLPLPY  360
VESSSDESMD NLLQNDATQD GASNEGIWSL DELLMAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20138196160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20139196563ATERF1
3gcc_A9e-20139196563ATERF1
5wx9_A3e-191391981474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8313920.0AY831392.1 Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional factor 1 (BIERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A0D3H7790.0A0A0D3H779_9ORYZ; Uncharacterized protein
TrEMBLI1QP760.0I1QP76_ORYGL; Uncharacterized protein
STRINGORGLA09G0085500.10.0(Oryza glaberrima)
STRINGOBART09G11390.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-26related to AP2 12