PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G10730.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 376aa    MW: 40619 Da    PI: 8.2079
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G10730.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2414.7e-1346102155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  s+n  ++k+   g ++ +e Aa+a++ a++k++g
  OBART09G10730.2  46 SVYRGVTRHRWTGRFEAHLWDkNSWNEsQNKKGKQGAYDDEEAAARAYDLAALKYWG 102
                      78*******************8888888775555599******************98 PP
2AP252.21.6e-16145196155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  OBART09G10730.2 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 196
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-946102IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1546112IPR016177DNA-binding domain
PROSITE profilePS5103219.13747110IPR001471AP2/ERF domain
SMARTSM003801.1E-1947116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1347112IPR001471AP2/ERF domain
PRINTSPR003674.4E-64859IPR001471AP2/ERF domain
PfamPF008471.5E-12145196IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18145206IPR016177DNA-binding domain
CDDcd000181.20E-22145206No hitNo description
PROSITE profilePS5103218.36146204IPR001471AP2/ERF domain
SMARTSM003801.7E-25146210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-18146205IPR001471AP2/ERF domain
PRINTSPR003674.4E-6186206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAKPRKNSTT TNTSSSGVAA AAAAAAVKPK RTRKSVPRES PSQRSSVYRG VTRHRWTGRF  60
EAHLWDKNSW NESQNKKGKQ GAYDDEEAAA RAYDLAALKY WGPDTILNFP LSAYEGELKE  120
MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAAMAYDMA AIEYRGLNAV TNFDLSRYIK WLRPGADGAG AAQNPHPMLG ALSAQDLPAI  240
DLDAMASSFQ HDGHGAAAAA AQLIPARHSL GHTPTTSALS LLLQSPKFKE MIERTSAAET  300
TTTSSTTTSS SSPSPPQATK DDGASPQCSF PEDIQTYFGC AAEDGAAGAG YADVDGLFFG  360
DLAAYASPAF HFELDL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116170.0AK111617.1 Oryza sativa Japonica Group cDNA clone:J013102L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611852.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D3H7030.0A0A0D3H703_9ORYZ; Uncharacterized protein
STRINGOPUNC09G09320.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.19e-97ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]