PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G10100.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 294aa    MW: 31714.5 Da    PI: 7.0858
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G10100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.81.3e-46231601128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pk........kvkaeek.ew..yfFskrdkkyatgkrknratksgy 82 
                      lppGfrF+Ptd elv +yL++k+++  ++   +i+++d+y++ePwdL p+        +  +ee+ e   yfF++r+ + ++g+r+nrat++gy
  OBART09G10100.1  23 LPPGFRFRPTDGELVAHYLARKAADAGFTS-AAIRDADLYRAEPWDLlPSprcdaaaaE--EEEEeERcgYFFCTRSFRWPSGTRTNRATAAGY 113
                      79*************************999.78**************634567776431..222222258************************ PP

              NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      Wk+tgkdk+vl+  +g+ vg+kktLvfy+grap+gekt+Wvmheyrl
  OBART09G10100.1 114 WKSTGKDKAVLHGgGGRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 160
                      ************877889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-5214192IPR003441NAC domain
PROSITE profilePS5100551.98723192IPR003441NAC domain
PfamPF023653.4E-2724160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAGGGGGDRA PSSSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TSAAIRDADL  60
YRAEPWDLLP SPRCDAAAAE EEEEEERCGY FFCTRSFRWP SGTRTNRATA AGYWKSTGKD  120
KAVLHGGGGR PVGVKKTLVF YRGRAPRGEK TSWVMHEYRL LHGGAAATAS SSLTPRTVVA  180
RSEWVICRVF VRKTPDGNND RGTTEHHLPS DDAHLRSSPA PANSVDGAGH ASCSFFSGAN  240
ESMAPSDHFN IGDDMILHGH DEEELLMMNC SSAFDLPELL AGPLIQRAMA CSKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-412319415170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0641911e-173AK064191.1 Oryza sativa Japonica Group cDNA clone:002-104-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.11e-178NAC domain-containing protein 79
SwissprotQ9FLR37e-54NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0D3H6T30.0A0A0D3H6T3_9ORYZ; Uncharacterized protein
STRINGOBART09G10100.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-54NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]