PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G07840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 280aa    MW: 29464.7 Da    PI: 6.354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19110155251
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ 
  OBART09G07840.1 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAS 155
                      59******9.**********955...5*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.82E-24109154No hitNo description
SuperFamilySSF541711.11E-17110155IPR016177DNA-binding domain
SMARTSM003802.0E-23110171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-25110155IPR001471AP2/ERF domain
PROSITE profilePS5103219.388110168IPR001471AP2/ERF domain
PfamPF008471.2E-13111155IPR001471AP2/ERF domain
PRINTSPR003672.3E-11111122IPR001471AP2/ERF domain
PRINTSPR003672.3E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASGSPPVC SQFSPTSPFS FPHAFAYGGG LAQQPELSPA  60
QMHYIQARLH LQRQAAQAGP LGPRAQPMKA SSSSASAAGA AATPPRPQKL YRGVRQRHWG  120
KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DQAASRDNAA SRGPLHASVD AKLQTLCQNI  180
AAAKNAKKSS VSASAAATSS APTSNCSSPS SDDASSCLES ADSSPSLSPS SAATTAETPA  240
TVPEMQQLDF SEAPWDEAAA FALTKYPSYE IDWDSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-14109156452ATERF1
3gcc_A2e-14109156452ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055250.0AP005525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0564H06.
GenBankAP0055800.0AP005580.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1759_F09.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankHQ8588240.0HQ858824.1 Oryza sativa Japonica Group isolate UT1322 AP2-EREBP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612138.11e-150ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0D3H6320.0A0A0D3H632_9ORYZ; Uncharacterized protein
STRINGOBART09G07840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-28ERF family protein