PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART09G04520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 250aa MW: 27332.2 Da PI: 8.8171 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 106 | 2.1e-33 | 33 | 87 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYRl OBART09G04520.1 33 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRL 87 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-31 | 30 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.738 | 30 | 90 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.5E-24 | 33 | 88 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.97E-16 | 33 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-8 | 35 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-21 | 128 | 173 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010628 | Biological Process | positive regulation of gene expression | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MFPPGLIHHR PDGGEAGRAA GGGPSLVLTA DPKPRLRWTA DLHERFVDAV AQLGGPEKAT 60 PKTILRTMGV KGLTLFHLKS HLQKYRLGKQ SGKEASEQSK DASYLLDAQG GMSVSPRVST 120 QDVKENQEVK EALRAQMEMQ RRLHEQVEVQ KHVQIRMEAY QKYIDTLLEK ACKIVSEQLA 180 SSGFSISDND LPELSGGVMC GSADTLSSSI FHQLSVSPIN LHSPEGKPTP SGIEGQMILQ 240 KSPELKRKSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-19 | 33 | 89 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00378 | DAP | Transfer from AT3G24120 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069336 | 0.0 | AK069336.1 Oryza sativa Japonica Group cDNA clone:J023010K22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611986.1 | 0.0 | protein PHR1-LIKE 2 | ||||
Swissprot | Q94A57 | 3e-70 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | A0A0D3H4W8 | 0.0 | A0A0D3H4W8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0B119 | 0.0 | A0A0E0B119_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0EQI6 | 0.0 | A0A0E0EQI6_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0IHN2 | 0.0 | A0A0E0IHN2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QPE1 | 0.0 | A0A0E0QPE1_ORYRU; Uncharacterized protein | ||||
TrEMBL | B9G2Q6 | 0.0 | B9G2Q6_ORYSJ; Uncharacterized protein | ||||
STRING | OGLUM09G05270.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | OMERI09G03370.1 | 0.0 | (Oryza meridionalis) | ||||
STRING | ORUFI09G05100.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA09G04720.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART09G04520.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 2e-72 | G2-like family protein |
Publications ? help Back to Top | |||
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