PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G00030.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 487aa    MW: 54237.4 Da    PI: 10.3387
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G00030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.88.1e-1079166397
           DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ +
  OBART09G00030.1  79 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRNV 164
                      9************************65..56789999999999865278899********9999998888......556899************ PP

           DUF573  96 Wg 97 
                      W 
  OBART09G00030.1 165 WV 166
                      *6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-1379165IPR007592Protein of unknown function DUF573
PfamPF030171.8E-17390444IPR004264Transposase, Tnp1/En/Spm-like
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKPSQEEEA LRLPLPPPDR KRKKASEPVN SPERAKKKKK  60
TATPHEPPSA KQQKRPLPFQ RTWSPNDEVL ILEAMAAHRQ EHGKVPTAAE LFPVLNGRLD  120
RKRLTYKKLA DKLRTFMRRH GRDAKNGPPT QAHDRRLYDL SRNVWVSQTQ PPNLIANANS  180
NIAGGQPNQH DAMPTAGKAF VKMRDSYPNL TQALLLLVGT DLEKALTAID ETKAQALDLK  240
VSNLKKELSE AVMESATIQS TESSKIPCFP STKLQPEFGA EIEKNFQLEH LDEMKGAQSQ  300
QMVDSKQQQD KSSAKGIICE SSESGLRSIV ADNNILCNTL QKEMVVQQKL SCGKTKEVTS  360
KHRHPQKLGE LRRVTMHGQK EDTNNEGGKE VLLLSTTRPH IPVAKATLQT SSGSKFVGGM  420
PLGSEWYQVF VNDVLKPEAP LLRPPGMKMA EALKSIIAWP CAQVTDKADF MSETKLYRFA  480
HYKGCGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11323DKKKKKKKKKP
21422KKKKKKKKK
31622KKKKKKK
43943RKRKK
54159RKKASEPVNSPERAKKKKK
65258ERAKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610933.10.0uncharacterized protein LOC4346364 isoform X1
TrEMBLA0A0D3H3E00.0A0A0D3H3E0_9ORYZ; Uncharacterized protein
STRINGOBART09G00030.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-11DNA-binding storekeeper protein-related transcriptional regulator