PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G22350.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 469aa    MW: 50026.6 Da    PI: 7.1309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G22350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42e-10327383561
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l +l+  +  l +
  OBART08G22350.1 327 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLAT 383
                      899******************************************999987766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-18323387IPR004827Basic-leucine zipper domain
PfamPF077163.2E-9324376IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829325388IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12327378No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-11327384No hitNo description
CDDcd147032.99E-22328379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDDPGAADPG ARPHHVSPGQ PPVVPRSPTP LDLSSAAAAA AAASYRRLSP SLRPPAHPQA  60
RLPSPYPQIP SSSSSAAAAA AAAGSSGHHA RSLSQPLFFS LDSLPPLPYA DLAAPPAIPP  120
SPPSSSSDPP PPGLPPRKGG HRRSQSDIPF GFSHLSPPLP PPAPVKREAA TAAEGCRSDG  180
DDFALYDLVN SYMDLDGMEA LNSSEERHED RDSRASGTRA GSVADSSENE AESHSTPVER  240
KDGGGKSRHC RSLSVDSFIE KLNFDESPKL PLPSPSGGLS RSGSGSLDGG AASLFGSEFA  300
NGEFTEAEKK KIMANERLAE IALTDPKRVK RILANRQSAA RSKERKMRYI QELEHKVQVL  360
QTEATTLSAQ LTMLQRDSTG LATQNNELKI RLQAMEQQAQ LRDALNEALT AEVQRLKLAT  420
GEITDGRMSK GLQQQMNSQL IQLQQLQIQQ QQSSQTTQQG QQQQPQKSA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651132.10.0transcription factor VIP1
TrEMBLA0A0D3H2S90.0A0A0D3H2S9_9ORYZ; Uncharacterized protein
TrEMBLI1QLB00.0I1QLB0_ORYGL; Uncharacterized protein
STRINGORGLA08G0221100.10.0(Oryza glaberrima)
STRINGOBART08G22350.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-82bZIP family protein