PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G21800.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 153aa MW: 16202.2 Da PI: 9.5008 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 28.6 | 4.2e-09 | 6 | 76 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + yfF+ r +++ +g+r++ +++ g Wk a g+dk+v+++ +++lvg+kk ++ g Wvmhey+l OBART08G21800.2 6 SDGDKYFFAVRPHAA-RGRRQQVTASGGCWKpAGGRDKPVVVArcgGSHLVGVKKGMAAA------G-GGCWVMHEYSL 76 45678****999875.78899999999****666789**999777777889999888654......2.468******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.346 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.37E-16 | 5 | 100 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-5 | 10 | 76 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MQCASSDGDK YFFAVRPHAA RGRRQQVTAS GGCWKPAGGR DKPVVVARCG GSHLVGVKKG 60 MAAAGGGCWV MHEYSLALPM HKKGCLAEAE EWVVCRIFQR SSSGSRSPRR PDNDVRRTMP 120 AVAELGRSPS PSSSSSQSSC VTSSSDQEEV SSG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061543 | 1e-155 | AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence. | |||
GenBank | AK068776 | 1e-155 | AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence. | |||
GenBank | AK104766 | 1e-155 | AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence. | |||
GenBank | CT829331 | 1e-155 | CT829331.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA110N11, full insert sequence. | |||
GenBank | CT829332 | 1e-155 | CT829332.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114M05, full insert sequence. | |||
GenBank | EU846997 | 1e-155 | EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650414.1 | 1e-68 | NAC domain-containing protein 18 | ||||
TrEMBL | A0A0D3H2L2 | 1e-106 | A0A0D3H2L2_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G21800.1 | 1e-101 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 3e-07 | NAC family protein |