PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G19960.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 615aa    MW: 68883.2 Da    PI: 7.1336
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G19960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3418.85.9e-128384221354
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 
                      eel +rmwkd+++lkr+ker+++l + ++aa++++k++k++eqa rkk++r QDgiL+YMlk mevcna+GfvYgiip+kgkpv+gasd++raW
  OBART08G19960.1  38 EELARRMWKDKIKLKRIKERQQKL-ALQQAALEESKTKKMSEQALRKKTARVQDGILRYMLKLMEVCNARGFVYGIIPDKGKPVSGASDNIRAW 130
                      8********************986.577778*************************************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--T CS
             EIN3  95 WkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglsk 188
                      Wkekv+fd ngp+ai+ky+ +n +l +++++   +  ++hsl++lqD+tlgSLLs+lmqhc+p+qr++pl+kgv+pPWWP+G+e+ww +lgl+ 
  OBART08G19960.1 131 WKEKVRFDVNGPVAIAKYEVENSMLVDAKRR---GVLNQHSLMDLQDATLGSLLSSLMQHCSPQQRKYPLDKGVPPPWWPSGNEDWWISLGLPM 221
                      **************************99999...88********************************************************** PP

                      T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX....XXXXXXXXXXXX CS
             EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss....slrkqspkvtls 277
                        + ppy+kphdlkk+wkv+vL  vikhm+p++++ir+++r+sk+lqdkm+akes ++l vl++ee  +++     s+    s+r+++ + ++s
  OBART08G19960.1 222 GIS-PPYRKPHDLKKVWKVGVLMGVIKHMAPNFDKIRNCVRKSKCLQDKMTAKESLIWLGVLRREEIYFRSSDNVgSQithrSSREGKSDDIYS 314
                      999.9*************************************************************98876554453355669999******** PP

                      XXXXXXXXXXXXXX.XXXXXXXXXX.................................XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.X CS
             EIN3 278 ceqkedvegkkeskikhvqavktta.................................gfpvvrkrkkkpsesakvsskevsrtcqssqfrgse 338
                      +++++dv+  +e+  +++++++  +                                 g++  rkrk+++++  +++s+  +++ + +q+    
  OBART08G19960.1 315 SSDEYDVDHLEEPPRSSSSKDDVGRrqptaqireehtssrhnrgrhdqqpnqvlpsneGTNESRKRKRPSGHLLTAESEVEVTQKDDNQLA--I 406
                      ********6666665666666555567778999999999*******************99*******999999999998666677777776..9 PP

                      XXXXXXXXXXXXXXXX CS
             EIN3 339 telifadknsisqney 354
                      +++ ++++++i+q+e+
  OBART08G19960.1 407 VSNALPNMSRINQTEM 422
                      ************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.3E-12538286No hitNo description
Gene3DG3DSA:1.10.3180.108.0E-67162290IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.11E-61166289IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MGNPSILTED LGDTSDFEVD GVENLTENDV SDEEIDAEEL ARRMWKDKIK LKRIKERQQK  60
LALQQAALEE SKTKKMSEQA LRKKTARVQD GILRYMLKLM EVCNARGFVY GIIPDKGKPV  120
SGASDNIRAW WKEKVRFDVN GPVAIAKYEV ENSMLVDAKR RGVLNQHSLM DLQDATLGSL  180
LSSLMQHCSP QQRKYPLDKG VPPPWWPSGN EDWWISLGLP MGISPPYRKP HDLKKVWKVG  240
VLMGVIKHMA PNFDKIRNCV RKSKCLQDKM TAKESLIWLG VLRREEIYFR SSDNVGSQIT  300
HRSSREGKSD DIYSSSDEYD VDHLEEPPRS SSSKDDVGRR QPTAQIREEH TSSRHNRGRH  360
DQQPNQVLPS NEGTNESRKR KRPSGHLLTA ESEVEVTQKD DNQLAIVSNA LPNMSRINQT  420
EMMGMANQMT SLSHVNTTET LQHQYVQGNF VSSPAAVVNN YNSNQITNVN PSRIYMGYQP  480
LACQNNGHTN PWSEDTFQVD VGPPPIDFTT NSSSGGNHSL PMKQSLPKSI DDHVPITETG  540
VLADSSSYGY HITATGSRNS TSVAGHGNQL MGDPFDSGTA DKFNGNSFDG LPFDFIGSSP  600
IPDIGKFLYR SLANR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-601662929135ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648717.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-135EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A0D3H1Z70.0A0A0D3H1Z7_9ORYZ; Uncharacterized protein
STRINGOBART08G19960.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-126ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]