PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G17760.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 331aa    MW: 35902.5 Da    PI: 9.7781
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G17760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.84e-34261232103
                      HHHHHHHHHCTGGGTTTSEES.SSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.eng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                      Fl+k+y++++d+++++++sw  ++g    +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+
  OBART08G17760.1  26 FLTKTYQLVDDPATDHVVSWGdDDGgesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGE 110
                      9*******************9544478889****************************************999.........************ PP

                      XXXXXXXXXXXXX CS
     HSF_DNA-bind  91 kellekikrkkse 103
                      k+ll++i+r+ks+
  OBART08G17760.1 111 KQLLCEIHRRKSA 123
                      **********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3516115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-5522120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-3123120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2926120IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEWEEESEAA RQKAAAASAS VVPAPFLTKT YQLVDDPATD HVVSWGDDDG GESASSFVVW  60
RPPEFARDIL PNYFKHSNFS SFVRQLNTYG FRKVVPERWE FANEFFRKGE KQLLCEIHRR  120
KSAAATAALP VAPSSRLLSQ LGPVIAPARR AAATPEEEAL MQENHRLRRG NAALVQELAH  180
MRKLYSDIIY FVQNYVRPVA PSPAAAAALH GLGVLRPPPA GGKAPASEVR GASGRSATSS  240
SSLTVAEDQP TLLALRLPRT TEKIINEVSG GNRGGSTKLF GVHLSSADEQ TSSGASRKRS  300
PPQEQPPTSP APKRTLVVEH SELRLSIVSP P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-231512019129Heat shock factor protein 1
5d5v_B5e-231512019129Heat shock factor protein 1
5d5v_D5e-231512019129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046930.0AP004693.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0461F06.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649314.10.0putative heat stress transcription factor B-4a
SwissprotQ6Z9R80.0HFB4A_ORYSJ; Putative heat stress transcription factor B-4a
TrEMBLA0A0D3H1940.0A0A0D3H194_9ORYZ; Uncharacterized protein
STRINGOBART08G17760.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-61heat shock transcription factor B4