PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G15790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 360aa    MW: 37816.3 Da    PI: 7.9825
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G15790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.6e-1677122147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l ++v+++G+ +W++Ia ++  gR++k+c++rw++ 
  OBART08G15790.1  77 RGHWRPAEDAKLRELVALYGPQNWNLIADKLD-GRSGKSCRLRWFNQ 122
                      899*****************************.***********996 PP
2Myb_DNA-binding52.21.4e-16130172246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++ eE+e+l  a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  OBART08G15790.1 130 RPFSDEEEERLMAAHRFYGNK-WAMIARLFP-GRTDNAVKNHWHV 172
                      68*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.59972123IPR017930Myb domain
SMARTSM007179.9E-1476125IPR001005SANT/Myb domain
PfamPF002491.8E-1577122IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-2777170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2578130IPR009057Homeodomain-like
CDDcd001671.01E-1280121No hitNo description
PROSITE profilePS5129424.91124178IPR017930Myb domain
SMARTSM007174.9E-13128176IPR001005SANT/Myb domain
PfamPF002498.0E-13129171IPR001005SANT/Myb domain
CDDcd001671.47E-10131171No hitNo description
Gene3DG3DSA:1.10.10.604.4E-20131177IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MPCTSAAWML HVGGVVVVVV QGRGRVVTAG TTTMDTGGYN NGGGGGGGGG NGGGGGDHQE  60
SSSSGGGGGQ SSRLAARGHW RPAEDAKLRE LVALYGPQNW NLIADKLDGR SGKSCRLRWF  120
NQLDPRISKR PFSDEEEERL MAAHRFYGNK WAMIARLFPG RTDNAVKNHW HVIMARKYRE  180
QSTAYRRRKL NQAVQRKLDA TTASDVVVAH HHPYAAAHDP YAFTFRHYCF PFPAACPAAA  240
DEPPFTCLFP GTAATAGRGG GGGMTWPDAM AAGEVIDDGA GGGRYVVAEP PPPPFLVPAA  300
PHGWLGGHEM MVMVNDGGDV AAGVASSYDG MIGRDQGGGG SHFEAAAAPA FIDFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-33771777107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883219.10.0transcription factor CSA-like isoform X2
TrEMBLA0A0D3H0K90.0A0A0D3H0K9_9ORYZ; Uncharacterized protein
STRINGOBART08G15790.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-70myb domain protein 105