PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G15770.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 369aa MW: 39599 Da PI: 6.7035

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G15770.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	31.1	5.2e-10	23	46	2	25
G2-like 2 prlrWtpeLHerFveaveqLGGse 25 +rlrWt +LHerFv av++LGG++ OBART08G15770.1 23 ARLRWTGQLHERFVLAVAELGGAD 46 7*********************97 PP
2	G2-like	37.6	4.8e-12	76	106	21	51
G2-like 21 LGGsekAtPktilelmkvkgLtlehvkSHLQ 51 LG + AtPk++l++m v+gLtl+h+kSHLQ OBART08G15770.1 76 LGAIAGATPKSVLRAMAVPGLTLYHLKSHLQ 106 888999************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-22	20	47	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-22	82	106	IPR009057	Homeodomain-like
Pfam	PF14379	9.6E-15	215	255	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MSSQQQQQHA GEAPASATAA ARARLRWTGQ LHERFVLAVA ELGGADSKPH PRAFLLLLPP 60 LTSLIMGMAD RSALFLGAIA GATPKSVLRA MAVPGLTLYH LKSHLQVRAC VRHAAGELSP 120 AADQLLANSV CIGSWFLTVL SSLPLLQKYR QAVSRGGNGG GGGSGSLNDR SSSSERQPAD 180 HDGDSAADEP RTIAYDGDSD GDAKEALRDS SRSMVQMQRE VQRKLQEQIE VQRHLQLRME 240 AQGRYLQSVL RRAQQVLADH SLASSPEAAT AELSELASAV DIECMSSSSP PRHHRQSATT 300 DSCVTTTSSS EAESKAAGSK RLHTSDCTVE QPVQGKRAFN FLQRHNQADQ EEEYAGAEDG 360 SSSEIDLNR

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MSSQQQQQHA GEAPASATAA ARARLRWTGQ LHERFVLAVA ELGGADSKPH PRAFLLLLPP  60
LTSLIMGMAD RSALFLGAIA GATPKSVLRA MAVPGLTLYH LKSHLQVRAC VRHAAGELSP  120
AADQLLANSV CIGSWFLTVL SSLPLLQKYR QAVSRGGNGG GGGSGSLNDR SSSSERQPAD  180
HDGDSAADEP RTIAYDGDSD GDAKEALRDS SRSMVQMQRE VQRKLQEQIE VQRHLQLRME  240
AQGRYLQSVL RRAQQVLADH SLASSPEAAT AELSELASAV DIECMSSSSP PRHHRQSATT  300
DSCVTTTSSS EAESKAAGSK RLHTSDCTVE QPVQGKRAFN FLQRHNQADQ EEEYAGAEDG  360
SSSEIDLNR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	0.0	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650853.1	1e-157	myb-related protein 2
TrEMBL	A0A0D3H0K7	0.0	A0A0D3H0K7_9ORYZ; Uncharacterized protein
STRING	OBART08G15770.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11264	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	4e-29	G2-like family protein