PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G15250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HB-other | ||||||||
Protein Properties | Length: 233aa MW: 26111 Da PI: 4.4506 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 15.9 | 2.2e-05 | 121 | 159 | 11 | 45 |
HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkkl....gLterqVk 45 ++e+Le+++ +++p+ ++r++L ++ +++ +q+k OBART08G15250.1 121 EVEALERVYTDCPKPTSARRQQLLCECpilaNIEPKQIK 159 689************************999999999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.940.10 | 8.3E-26 | 48 | 121 | IPR012293 | RNA polymerase subunit, RPB6/omega |
SuperFamily | SSF63562 | 3.4E-22 | 53 | 126 | IPR006110 | RNA polymerase, subunit omega/K/RPB6 |
Pfam | PF01192 | 1.1E-9 | 83 | 121 | IPR006110 | RNA polymerase, subunit omega/K/RPB6 |
CDD | cd00086 | 0.0034 | 119 | 159 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-4 | 122 | 159 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAEDDYNDMD MGFASPPPSL ARFRRTRMSP QNLRLRKSYG LFTFSELEGA EEEPENNNED 60 AVDDVVGAED DREQEKTARP WKTSKYMTKY ERVRILGTRA LQISMNAPVM VELEGGTDPL 120 EVEALERVYT DCPKPTSARR QQLLCECPIL ANIEPKQIKF SLFSVTKTLV MAVLGTQVAA 180 HHNGHGMSHE NHTQESESSV EQHDPESQDD ISIKATPADE SPPEETSAAP TKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3h0g_F | 5e-15 | 83 | 133 | 71 | 121 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
3h0g_R | 5e-15 | 83 | 133 | 71 | 121 | DNA-directed RNA polymerases I, II, and III subunit RPABC2 |
5u0s_f | 5e-15 | 83 | 133 | 71 | 121 | RNA polymerase II subunit Rpb6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121807 | 1e-102 | AK121807.1 Oryza sativa Japonica Group cDNA clone:J033097N04, full insert sequence. | |||
GenBank | AP004463 | 1e-102 | AP004463.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0456B03. | |||
GenBank | AP014964 | 1e-102 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CT833854 | 1e-102 | CT833854.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA035N11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657672.1 | 1e-38 | PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A-like | ||||
TrEMBL | A0A0D3H0F0 | 1e-174 | A0A0D3H0F0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G15250.1 | 1e-174 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23751 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 2e-16 | HD-ZIP family protein |