PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G12530.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 764aa    MW: 84619.8 Da    PI: 8.8341
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G12530.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR36.59.5e-12171209342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OBART08G12530.2 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                      789************************.********9875 PP
2TCR36.59.5e-12310348342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OBART08G12530.2 310 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 348
                      789************************.********9875 PP
3TCR46.95.5e-15391431141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  OBART08G12530.2 391 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 431
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163415.056170235IPR005172CRC domain
PfamPF036386.7E-8172206IPR005172CRC domain
SMARTSM011141.4E-7308348IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.493309431IPR005172CRC domain
PfamPF036386.7E-8311345IPR005172CRC domain
SMARTSM011147.4E-16391432IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-11394429IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PQTPPCYQLP LAKVNSSLPL  60
WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRWSP  120
QHVSPALKQD SPKMERPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC  240
EEIVVRRCFP FFLSAATPTP REFVRRRRRH HLRRSPSIPR ASRGAGRMLS SQKPSSEMWS  300
ETKDVTLTRK TNCSCKYSKC LKLYCECFEK GRYCIGCNCT NCCNNVNHEN ARQDAINVAL  360
ERNPAAFMPK VSNSTAHNCE SKAAEGDIVG KHTKGCKCKR TECLKKYCEC FKASVFCSEN  420
CRCTGCKNYK SNADRISQKN TVHAHHVQNP ASSGMVGQSV IIFHAAENDS SLSLAASVSD  480
HSINNNTSHA LSCSLTSSVT REDAKSLVKY VPHEVTYRPS LADFIQIEDV NELCNLLILV  540
SRQAGATLLE SGMKENTKRK KLNRVDSCLS STNHDREAIQ KEPAKQMCSL EKSSNEVLIA  600
EGRLELPRAD PFDIQKGNKR PLSPGTQALM CDEQDAVFQD SKAPDATPST TEENLVDIFK  660
EQEKRVLTNF RDYLCKLATC GKLQELKLSL ASTNCSEQAF ADHGNNSSIT RVAKDQTNNP  720
SVLQQGGKHY RSGRLILART KIGNAGIWKL MGQKSPLHNG VDKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2531343514127Protein lin-54 homolog
5fd3_B2e-2531343514127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0D3GZK00.0A0A0D3GZK0_9ORYZ; Uncharacterized protein
STRINGOBART08G12530.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.25e-60Tesmin/TSO1-like CXC domain-containing protein