PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G12530.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 920aa    MW: 101678 Da    PI: 9.0117
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G12530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR36.21.2e-11171209342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OBART08G12530.1 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                      789************************.********9875 PP
2TCR36.21.2e-11466504342
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  OBART08G12530.1 466 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 504
                      789************************.********9875 PP
3TCR46.66.8e-15547587141
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  OBART08G12530.1 547 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 587
                      589***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163415.056170235IPR005172CRC domain
PfamPF036388.3E-8172206IPR005172CRC domain
SMARTSM011141.4E-7464504IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.493465587IPR005172CRC domain
PfamPF036388.3E-8467501IPR005172CRC domain
SMARTSM011147.4E-16547588IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11550585IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PQTPPCYQLP LAKVNSSLPL  60
WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRWSP  120
QHVSPALKQD SPKMERPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVSNSTAHNC  240
EEIVVRRCFP FFLSAATPTP REFVRRRRRH HLRRSPSIPR ASRGAGRVGS RNWWEMEKPL  300
QLCPGSVKID FASASYAGKA DIAATAAALL HALGPPQTPP CYQLPLAKVN SSLPLWPPVI  360
CPSTFAQKRP MSLPSPPPAK KLQVQQSSSM LPQDFPKLEV LPVEKPTKLQ VRWSPQHVSP  420
ALKQDSPKME RPLLPRPATF IDVMLSSQKP SSEMWSETKD VTLTRKTNCS CKYSKCLKLY  480
CECFEKGRYC IGCNCTNCCN NVNHENARQD AINVALERNP AAFMPKVSNS TAHNCESKAA  540
EGDIVGKHTK GCKCKRTECL KKYCECFKAS VFCSENCRCT GCKNYKSNAD RISQKNTVHA  600
HHVQNPASSG MVGQSVIIFH AAENDSSLSL AASVSDHSIN NNTSHALSCS LTSSVTREDA  660
KSLVKYVPHE VTYRPSLADF IQIEDVNELC NLLILVSRQA GATLLESGMK ENTKRKKLNR  720
VDSCLSSTNH DREAIQKEPA KQMCSLEKSS NEVLIAEGRL ELPRADPFDI QKGNKRPLSP  780
GTQALMCDEQ DAVFQDSKAP DATPSTTEEN LVDIFKEQEK RVLTNFRDYL CKLATCGKLQ  840
ELKLSLASTN CSEQAFADHG NNSSITRVAK DQTNNPSVLQ QGGKHYRSGR LILARTKIGN  900
AGIWKLMGQK SPLHNGVDKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2546959114127Protein lin-54 homolog
5fd3_B3e-2546959114127Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650564.10.0protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLA0A0D3GZJ90.0A0A0D3GZJ9_9ORYZ; Uncharacterized protein
STRINGOBART08G12530.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.29e-60Tesmin/TSO1-like CXC domain-containing protein