PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G10540.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 417aa    MW: 47233.7 Da    PI: 9.0579
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G10540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-1660140995
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +   ++ +++pk+f+++ +g+   + +++le+++ +s +v++  +k+++++++t+GW +Fvk  +L+ gD+++F+++g+s+f   v 
  OBART08G10540.1  60 MGDFQHEMIIPKEFVQRLKGD--IPGEIQLETRNRNSHTVRV--DKTQEKVIFTEGWAQFVKTFDLQMGDSMMFRFNGNSQF--DVI 140
                      5556788********999888..5558***************..*********************************99999..544 PP
2B341.52.3e-133304131099
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ + l++ +++++++ ++   +kt+   ++ g +W+++l  + +sg   + +G ++F+++n++ +gD+++F+l ++++ +++v+++r+
  OBART08G10540.1 330 SGRISSLSIANRYVDNYLQD---EKTIC-LSRLGDKWNIRL--SDSSGNRRMVGGCRKFAEDNDVGVGDICLFELLKNHKCTMKVHIIRA 413
                      55667899******888433...23555.7789********..77777777889*********************9998888****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-2149143IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-1949143IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.71652145IPR003340B3 DNA binding domain
CDDcd100172.47E-1753143No hitNo description
SMARTSM010199.8E-855145IPR003340B3 DNA binding domain
PfamPF023621.5E-1463138IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-16314414IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-15315414IPR015300DNA-binding pseudobarrel domain
CDDcd100177.38E-14318412No hitNo description
SMARTSM010195.6E-4320414IPR003340B3 DNA binding domain
PROSITE profilePS508639.291321414IPR003340B3 DNA binding domain
PfamPF023628.1E-12328413IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGFWAVGGCG RERETSRAAA ESSRGRGDGR RRRPRSRRRR DEQDYRNLDD SQKHFLLTMM  60
GDFQHEMIIP KEFVQRLKGD IPGEIQLETR NRNSHTVRVD KTQEKVIFTE GWAQFVKTFD  120
LQMGDSMMFR FNGNSQFDVI IVDQIGREKA CSAVVDDSQN PNVQERRVDA TETLNSSRAH  180
SQPMPMQSTT ETVNHSHARP CPMHTAVDCM PLSHAHPQPM PMQFPTETVN HCHAPTGPME  240
MPLENVALSH AHARPLQMQS QPTDRLTQVQ RGYSLSSKDQ DCRVGVIPDP IIGQKTILSR  300
VQVNVVKRKI QNIGSQIPIF VSVIGKNNAS GRISSLSIAN RYVDNYLQDE KTICLSRLGD  360
KWNIRLSDSS GNRRMVGGCR KFAEDNDVGV GDICLFELLK NHKCTMKVHI IRAKDIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12939RRRRPRSRRRR
23140RRPRSRRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0683590.0AK068359.1 Oryza sativa Japonica Group cDNA clone:J013146O10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648704.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648705.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648706.10.0B3 domain-containing protein Os08g0324300
RefseqXP_015648707.10.0B3 domain-containing protein Os08g0324300
SwissprotQ6Z0D91e-177Y8347_ORYSJ; B3 domain-containing protein Os08g0324300
TrEMBLA0A0D3GYY30.0A0A0D3GYY3_9ORYZ; Uncharacterized protein
STRINGOBART08G10540.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]