PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G07590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CO-like | ||||||||
Protein Properties | Length: 222aa MW: 22523.1 Da PI: 8.1112 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6e-07 | 16 | 58 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C +++ ++ +C + lC C + H H++vpl OBART08G07590.1 16 ACGVCGSA-ATVYCAADAAALCVPCDAAVHAAnplasrHDRVPL 58 6******9.*********************66899999999986 PP | |||||||
2 | CCT | 67.3 | 4.2e-23 | 123 | 166 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re++++RY+eKrk+RkF+K+irY+sRKa+Ae RpR+KGrFvk+a OBART08G07590.1 123 REERVRRYREKRKNRKFQKTIRYASRKAYAEARPRIKGRFVKRA 166 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 8.8E-11 | 12 | 58 | IPR000315 | B-box-type zinc finger |
PROSITE pattern | PS00197 | 0 | 12 | 20 | IPR006058 | 2Fe-2S ferredoxin, iron-sulphur binding site |
CDD | cd00021 | 8.16E-8 | 17 | 58 | No hit | No description |
PROSITE profile | PS50119 | 9.57 | 17 | 58 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.479 | 123 | 165 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.3E-17 | 123 | 165 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0051537 | Molecular Function | 2 iron, 2 sulfur cluster binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MASDGSASPA SCGGAACGVC GSAATVYCAA DAAALCVPCD AAVHAANPLA SRHDRVPLAV 60 AMAAASSGVY DHLFAPDDDA ASSWAAAAAA GAALAALTPW SPADSVVVPT SAAGAVAAAA 120 AAREERVRRY REKRKNRKFQ KTIRYASRKA YAEARPRIKG RFVKRATTAA ASSSSDDDST 180 AAATEEAKFW LSFSDDGRAD GVGFYMDSTT AATAAYGVVP TF |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833687 | 1e-152 | CT833687.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008D13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182019.1 | 7e-60 | zinc finger protein CONSTANS-LIKE 2-like | ||||
TrEMBL | A0A0D3GXZ1 | 1e-151 | A0A0D3GXZ1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G07590.1 | 1e-152 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13066 | 22 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-10 | CONSTANS-like 5 |