PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G07280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WOX | ||||||||
Protein Properties | Length: 177aa MW: 19352.8 Da PI: 5.9177 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.7 | 1.5e-06 | 40 | 74 | 2 | 35 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAk 35 r+R+t+++eq+ +Le+ F++ +p ++e +++ + OBART08G07280.1 40 RSRWTPKPEQILILESIFNSgMVNPAKDETARIRR 74 89*****************99******99999876 PP | |||||||
2 | Wus_type_Homeobox | 63.9 | 3.2e-21 | 39 | 86 | 2 | 49 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkN 49 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+N OBART08G07280.1 39 VRSRWTPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDAN 86 589********************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MDRTATASWE VMSRRGEQQQ QLMMQAPARH AAAAAGEPVR SRWTPKPEQI LILESIFNSG 60 MVNPAKDETA RIRRLLERFG AVRDANMGLM ARHGGGDHHY SSYADSDATQ LSYQPTGTIQ 120 VFINGVAYDV PSGGALDMAG TFGRDAMLVH SSGEVLPVDE HGVLINSLQM GECYYLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107305 | 1e-147 | AK107305.1 Oryza sativa Japonica Group cDNA clone:002-126-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695539.1 | 2e-77 | PREDICTED: WUSCHEL-related homeobox 10-like | ||||
Swissprot | Q6Z3L4 | 3e-60 | WOX10_ORYSJ; WUSCHEL-related homeobox 10 | ||||
TrEMBL | A0A0D3GXV1 | 1e-129 | A0A0D3GXV1_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G07280.1 | 1e-130 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 2e-25 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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