PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G06030.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 438aa    MW: 49051.9 Da    PI: 6.1421
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G06030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC151.22e-472673701101
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   +e++t+fk  +lPlarikki+kadedvkmi+ eaP+l++kace+fil++tlrsw h+ee +rrtl++sd++a++++tdifdf
  OBART08G06030.1 267 QLQAFWADQmaeVEQMTEFKLPNLPLARIKKIMKADEDVKMIAGEAPALFAKACEMFILDMTLRSWQHTEEGRRRTLQRSDVEAVIKKTDIFDF 360
                      89******9777799******************************************************************************* PP

            NF-YC  92 lvdivprdel 101
                      lvdi+  d++
  OBART08G06030.1 361 LVDIITDDKM 370
                      *****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495908.5E-122292IPR007117Expansin, cellulose-binding-like domain
Gene3DG3DSA:2.60.40.7606.9E-122272IPR007117Expansin, cellulose-binding-like domain
PfamPF013572.8E-92371IPR007117Expansin, cellulose-binding-like domain
PROSITE profilePS508439.3842871IPR007117Expansin, cellulose-binding-like domain
SuperFamilySSF471138.05E-29247361IPR009072Histone-fold
PfamPF008081.8E-18289351IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.2E-32290365IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MAKPGLNDKL RHSGIIDIHF RREGSNPVYF AVLVKYEDLD GDVVQVDLME SKSAYGGAIR  60
VWTPMRESWG SASAATPARP FVTNNIIPAN WSRIAPSLPP SPLPRRPRSL RARPLPRLSR  120
LGLSLCPRLP DATLAALTAA PSISAVDISC SRGFLLLYSI TFSAYIVVLR TQEAYVQILQ  180
QLHRSTSLEM DPHSHKKAHE GLIGDNPDAY AVTTYQPVLM VEPSAAAAFP PAPQVAPAYP  240
VNPMQLPEHQ QHAIQQVQQL QQQQKEQLQA FWADQMAEVE QMTEFKLPNL PLARIKKIMK  300
ADEDVKMIAG EAPALFAKAC EMFILDMTLR SWQHTEEGRR RTLQRSDVEA VIKKTDIFDF  360
LVDIITDDKM KDDGMGSQAA SMVSPYTSGG MGFSFDLYPN QHHLAYMWPP QEQQEQWPPQ  420
EQQEQKQKQD SDGGGQDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-39275365393NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345RRTLQRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038750.0AP003875.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1119_C05.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649457.10.0nuclear transcription factor Y subunit C-4-like
SwissprotQ655V52e-54NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0D3GXF40.0A0A0D3GXF4_9ORYZ; Nuclear transcription factor Y subunit C
STRINGOBART08G06030.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169771112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.28e-49nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]