PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART08G05780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18311 Da PI: 6.7858 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 38 | 5e-12 | 1 | 28 | 102 | 129 |
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 ++ktLvfy+grapkg+kt+Wvmhe+rle OBART08G05780.1 1 MRKTLVFYRGRAPKGRKTEWVMHEFRLE 28 89***********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-16 | 1 | 46 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-4 | 1 | 27 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.027 | 1 | 46 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 163 aa Download sequence Send to blast |
MRKTLVFYRG RAPKGRKTEW VMHEFRLEPQ PLHLKEDWVL CRVFYKTRQT IPSPSSEEAV 60 TLPNELDLPA TPSLPPLIDA YIAFDSAPMT TPSMVGSYEQ VSCFSGLPTL PMKGSISFGD 120 LLAMDTSAEK KAIRVLHNSN TAKLELSPDW GQESGLSQMW NPQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK120197 | 0.0 | AK120197.1 Oryza sativa Japonica Group cDNA clone:J013036M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648318.1 | 1e-116 | NAC domain-containing protein 21/22 isoform X1 | ||||
Refseq | XP_015648319.1 | 1e-116 | NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 2e-25 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0D3GXA7 | 1e-118 | A0A0D3GXA7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G05780.1 | 1e-118 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G56010.1 | 1e-28 | NAC domain containing protein 1 |