PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G04290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | AP2 | ||||||||
Protein Properties | Length: 273aa MW: 29540.8 Da PI: 6.6917 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.7 | 4.3e-11 | 77 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++ k++g+++A+++d s+ g krk + g++ t+e Aa+a++ a++k++g OBART08G04290.1 77 SRYHGVTRLKWSGKFEAHLWDnSSQvEGrKRKGKH-GSYVTEENAARAHDLAALKYWG 133 79*******************55558777778888.999999**************98 PP | |||||||
2 | AP2 | 50.1 | 6.7e-16 | 178 | 232 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++k +grW A+I e + k ++lg+f t+ eAa+a++ a+ +l+g+ OBART08G04290.1 178 SSYRGVTRRK-DGRWQARIGRIGEsR--DtKDIYLGTFETEIEAAEAYDLAAIELRGA 232 67*****999.9******99953323..36**********99*************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-8 | 77 | 133 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-11 | 77 | 145 | No hit | No description |
SuperFamily | SSF54171 | 2.09E-11 | 77 | 144 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.791 | 78 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-13 | 78 | 149 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-10 | 78 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-11 | 178 | 231 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.40E-20 | 178 | 241 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-17 | 178 | 241 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.8E-25 | 179 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-19 | 179 | 239 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 179 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-8 | 180 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-8 | 221 | 241 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MATVQPAASD PAPPPPPETE EQPAAAGGEE IAALDEQLAV ADGGGDDGKA AAAAEGGGGG 60 GKLVAETMRK YAAPRSSRYH GVTRLKWSGK FEAHLWDNSS QVEGRKRKGK HGSYVTEENA 120 ARAHDLAALK YWGAGPNTKL NFNVSDYEKE IERMKTMSQD EFVVYIRRQS SCFSRGTSSY 180 RGVTRRKDGR WQARIGRIGE SRDTKDIYLG TFETEIEAAE AYDLAAIELR GAHAVTNFDI 240 SNYCEDGLKK LEASSEVPKL LEGPSKAAKL AGR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY685118 | 0.0 | AY685118.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D9 (AP2D9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650903.1 | 1e-155 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q84Z02 | 1e-65 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0D3GWT0 | 0.0 | A0A0D3GWT0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0I7N4 | 0.0 | A0A0E0I7N4_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YRN8 | 0.0 | A2YRN8_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA08G04140.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART08G04290.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-66 | AP2 family protein |
Publications ? help Back to Top | |||
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