PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G03460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 676aa MW: 75181.3 Da PI: 4.3351 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2e-52 | 9 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp GfrFhPtdeelv +yLk k++g+ +++evi+e+d++k+ePwdLp k +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + OBART08G03460.1 9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102 699************************99999***************96446677888************************************ PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 sk k++++g+kktLvf++grapkge+t W+mheyr OBART08G03460.1 103 RSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142 **988777777***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-59 | 3 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.568 | 9 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 10 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL 60 IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL 120 VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG 180 YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN 240 ATTNEVNISH MPHHGLDGGA KASPSTGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN 300 FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ 360 GEFMDDLSGL ENLDFWPDDR NPQLSALYED TPLLPYDSTD QDVLSMDSGA ESLQDLFNSM 420 DDSNARNNVW GNEPFLQGTG FPMSWPLQPN SAFPNQGTAN RRLMLQLSES LSPDFDASMT 480 RDECEDEEPG IVVTSKYVNE APEESTAEKD MPSDGDDAEP TGITILRRRT AXXFSDGDDA 540 ESTVQRVRLQ SNLDAAPCSS VDGSSSCIIN EGESERTMEK PEIEENAGST LAEGGTCHED 600 DQKEHDASAA NAKSVVRLRK TAEGSDKENK QEEEEGVLDS HVRAPGNKRG FPSYIIWLVL 660 SVALVLLISL GIYGWV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-45 | 9 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-45 | 9 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-45 | 9 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-45 | 9 | 164 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-45 | 9 | 164 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-45 | 9 | 164 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-45 | 9 | 164 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT832968 | 0.0 | CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence. | |||
GenBank | EU846994 | 0.0 | EU846994.1 Oryza sativa Japonica Group clone KCS281G09 NAC2 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650289.1 | 0.0 | NAC domain-containing protein 14 isoform X2 | ||||
TrEMBL | A0A0D3GWI6 | 0.0 | A0A0D3GWI6_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G03460.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5172 | 38 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.1 | 1e-69 | NAC 014 |