PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G01910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 147aa    MW: 15914.4 Da    PI: 8.8745
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G01910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.74.4e-094769123
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                     C+gC tlL Y rGA+++RC++C+
  OBART08G01910.1 47 CSGCPTLLFYNRGASNIRCPSCN 69
                     **********************8 PP

2zf-LSD132.51.4e-1085109125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+Crt+L+ P+GA+ V+Ca C  V
  OBART08G01910.1  85 CGQCRTTLMHPPGASTVQCATCRYV 109
                      **********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.8E-6434IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-4730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-104572IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-94769IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.7E-1182112IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-1185109IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVNPSAVA DMSELICSGC PTLLFYNRGA  60
SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST VQCATCRYVN HVRDARPQTV  120
LVENPKTLDD KGKLVSNVVV GVTSWKR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204540.0AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
GenBankCT8307650.0CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648991.11e-104protein LOL4
SwissprotQ84UR01e-105LOL4_ORYSJ; Protein LOL4
TrEMBLA0A0D3GW101e-103A0A0D3GW10_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QDY21e-103A0A0E0QDY2_ORYRU; Uncharacterized protein
TrEMBLB8BAG41e-103B8BAG4_ORYSI; Uncharacterized protein
TrEMBLI1QFD01e-103I1QFD0_ORYGL; Uncharacterized protein
STRINGORUFI08G02140.11e-104(Oryza rufipogon)
STRINGOS08T0130100-011e-104(Oryza sativa)
STRINGORGLA08G0013100.11e-104(Oryza glaberrima)
STRINGOBART08G01910.11e-104(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-40LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]