PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G00290.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 293aa    MW: 32510.1 Da    PI: 5.7441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G00290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM123.91.3e-38141251106
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                      +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++       +    e++ewyfFs +d+ky++g+r+nrat++g+Wkat
  OBART08G00290.1  14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKAT 104
                      69****************************.99**************9535441..14443666****************************** PP

              NAM  87 gkdkevlsk.kgelvglkktL 106
                      g+dk+vls+ +++++g++ktL
  OBART08G00290.1 105 GRDKPVLSSpSTRVIGMRKTL 125
                      *******9988899******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-408137IPR003441NAC domain
PROSITE profilePS5100536.48514176IPR003441NAC domain
PfamPF023653.5E-1815125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDRHEEEAGE SPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ  60
ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSPSTRVIG  120
MRKTLEEGWV VCRAFQKPMP NQQQHRLSYG CIPGSYGAGA YAAVPDNYSL LLHHDNPSFA  180
GRPLMGAAAS ALFANNNNNS VVDHSNILSS ESKLHFSDMM PPLESPTIVD GEGYVSQASS  240
CVDVDQQAGI VDWNLLTSLL PPPAHQLFHH LPSASSSKNS NNISSSGFID DRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-3731254118Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1106110.0AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence.
GenBankAP0046540.0AP004654.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0015C07.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankJN6340720.0JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.10.0NAC domain-containing protein 105
RefseqXP_025883308.10.0NAC domain-containing protein 105
TrEMBLA0A0D3GVH50.0A0A0D3GVH5_9ORYZ; Uncharacterized protein
STRINGOBART08G00290.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.15e-63vascular related NAC-domain protein 7