PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G26710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | G2-like | ||||||||
Protein Properties | Length: 361aa MW: 40056.7 Da PI: 7.3749 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96 | 2.7e-30 | 52 | 102 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 kprl+Wt+eLHerFveav+qLGG++kAtPkti++lm+++gLtl+h+kSHLQ OBART07G26710.1 52 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQ 102 79************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.136 | 49 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-28 | 50 | 102 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-14 | 51 | 103 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-21 | 52 | 103 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-8 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-25 | 170 | 216 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MTGTEQMMYH QQQVQSDSQH LSSRPGLPPE KQFLLQGGAD SSSGLVLSTD AKPRLKWTSE 60 LHERFVEAVN QLGGPDKATP KTIMRLMGIP GLTLYHLKSH LQVSSIIRDL KIETKLASFI 120 KYRLSKNLQS QANASRAQGG CSTTEIDKPC EGNGSPASHL DLETQTNSSM HINEALQMQI 180 EVQRRLHEQL EVQRHLQLRI EAQGKYLQSV LEKAQEALGT IAVAETAATA NASSSKRLQN 240 EHTQLHHHQQ QQQVGDGSVD SCLTACDCEG SHHSRSHGHR GEQDILSIGL PPFEPAAARS 300 GKEHHYLLFP NEPSRRRSCS DERRREMSTL QASELDLSIN GRSSSHSHRR ENIDLNGAGW 360 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 52 | 102 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 52 | 102 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 52 | 102 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 52 | 102 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067645 | 0.0 | AK067645.1 Oryza sativa Japonica Group cDNA clone:J013112H14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646570.1 | 0.0 | myb-related protein 1 isoform X2 | ||||
Swissprot | Q9FK47 | 4e-77 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | A0A0D3GV43 | 0.0 | A0A0D3GV43_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G26710.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-74 | G2-like family protein |
Publications ? help Back to Top | |||
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