PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G26400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 911aa    MW: 100025 Da    PI: 7.0536
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G26400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-19363462198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  ++
  OBART07G26400.1 363 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PGG 454
                      99**************************555567778***************9989999999***9.********************887.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OBART07G26400.1 455 KLVMGFRK 462
                      77877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-31355472IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-21360463IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-24361462No hitNo description
PfamPF023624.3E-16363462IPR003340B3 DNA binding domain
SMARTSM010194.0E-22363463IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547363464IPR003340B3 DNA binding domain
PROSITE profilePS5105014.706585635IPR011124Zinc finger, CW-type
PfamPF074961.5E-11590632IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 911 aa     Download sequence    Send to blast
MAGMAAAAAA LVAAKRCMNA ACGAPAPSPA GGEWRKGWPL RSGGFAVLCD KCGLAYEQLV  60
FCDIFHQKES GWRDCSFCGK RLHCGCIASK NSFDLLDSGG VQCVTCIKNS AVQSVPSPVV  120
PKLFSSQNNQ RLFGKSDDLL SGRPLETSSL MVDARNDDLT IIAKNNLPFM VKNVEAGQSS  180
NILRQKELEN GARQIKWELP TLSIGDMGRI PFLTRSQSAL ESRRDENKDP TTESTTSESL  240
SEACLNMSLG IASNGNKLEA TSTVERPMLS PTTGFPEGRE LTTALSPFQH AQRARHFLTR  300
PPRVGEGAVF DPTKDMLPHL RVARPPAEGR GRNQLLPRYW PRITDQELQQ ISGDSNSTIV  360
PLFEKVLSAS DAGRIGRLVL PKACAEAYFP PISQPEGRPL TIQDAKGKEW HFQFRFWPNN  420
NSRMYVLEGV TPCIQSLQLQ AGDTVTFSRI EPGGKLVMGF RKATNTVSLP DSQISAIANG  480
SILGDTLFSS TNENLAITDK FGSRPDEGSL QFLKRGRNIG SKSRRLSMDA EEAWELKLYW  540
DEVQELLRPA PTAKPTVVMI EDYEIEEYDE PPVFAKRSIF TIRSTGEQDQ WIQCDDCSKW  600
RRLPLNVIVA SKWTCADNTI DSKSCSCSAP EELTPKELHI VLQQYEDMRR RRNSFGFKQN  660
IPEMDAVSLD AFATAAVYGD VGNQGSPSVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP  720
ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKKIAWM NRDEPEGSSL SRSPQTVDTT  780
RDGDVTMFDK VDINKGHIDL NFHPTAVRDE ERHGGQPRVS MVSLLEVANR PLENYMKQNG  840
LTSLAGEQGS SSTCTGAATV PQPALVESEE RTSNNDGGRV ATAEQPESMA VDEAGDNQPD  900
KAAGDSAAAL A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C9e-673414651125B3 domain-containing transcription repressor VAL1
5yzz_C9e-673414651125B3 domain-containing transcription repressor VAL1
5z00_C9e-673414651125B3 domain-containing transcription repressor VAL1
5z00_G9e-673414651125B3 domain-containing transcription repressor VAL1
5z00_K9e-673414651125B3 domain-containing transcription repressor VAL1
5z00_M9e-673414651125B3 domain-containing transcription repressor VAL1
6j9a_A9e-673414652126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1730741RRRFKTLMMRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013560.0AK101356.1 Oryza sativa Japonica Group cDNA clone:J033035A04, full insert sequence.
GenBankAK2875760.0AK287576.1 Oryza sativa Japonica Group cDNA, clone: J065037D19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646778.10.0B3 domain-containing protein Os07g0679700 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A0D3GUZ50.0A0A0D3GUZ5_9ORYZ; Uncharacterized protein
STRINGORUFI07G27410.10.0(Oryza rufipogon)
STRINGOS07T0679700-010.0(Oryza sativa)
STRINGOBART07G26400.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-180HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]