PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G19010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 425aa MW: 45078.3 Da PI: 7.3239 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 174.7 | 2.7e-54 | 29 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ OBART07G19010.1 29 LPPGFRFHPTDEELVVHYLKKKAASVPLPV-TIIAEVDLYKFDPWELPEKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPIMA 121 79****************************.89***************99999***************************************** PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++e+vg+kk Lvfy+g+ pkg+kt+W+mheyrl OBART07G19010.1 122 SgsTREKVGVKKALVFYRGKPPKGVKTNWIMHEYRL 157 9777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-64 | 25 | 200 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.655 | 29 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-28 | 30 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MESPDSSSGS APPRVLRRQQ QQPGSAPELP PGFRFHPTDE ELVVHYLKKK AASVPLPVTI 60 IAEVDLYKFD PWELPEKANF GEQEWYFFSP RDRKYPNGAR PNRAATSGYW KATGTDKPIM 120 ASGSTREKVG VKKALVFYRG KPPKGVKTNW IMHEYRLTDT SSSAAAVATT RRPPPPITGG 180 SRGAVSLRLD DWVLCRIYKK TNKAGGGQRS MECEDSVEDA VAAYAPSSQQ HATAAAGMAG 240 SDGAGGVAAA HGGDYSSLLH HDSHEDTFLV NGLLTAEDAA GLSTGASSLS QLAAAARAAA 300 TPCDATKQLL APSPTPFNWF EAFLPRAKEF PGGLSRSSRD IGDMSLSSTV DRSLSEAGAV 360 AIDTGDAANG ANTMPAFINP LGVQGATYQQ HQAIMGASLP SESAAAAAAC NFQHPFQLSR 420 VNWDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-74 | 18 | 203 | 4 | 171 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063406 | 0.0 | AK063406.1 Oryza sativa Japonica Group cDNA clone:001-115-A08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645677.1 | 0.0 | NAC domain-containing protein 10 | ||||
Swissprot | A2YMR0 | 0.0 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
TrEMBL | A0A0D3GSI4 | 0.0 | A0A0D3GSI4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QE94 | 0.0 | I1QE94_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA07G0243600.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART07G19010.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-88 | NAC domain containing protein 25 |