PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G18780.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 829aa MW: 92347.6 Da PI: 7.7627 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.3 | 6.7e-19 | 345 | 444 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e+ OBART07G18780.2 345 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 436 89**************************777788889***************9989999999***9.********************987.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +lv+++++ OBART07G18780.2 437 KLVMGFRK 444 77777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:2.40.330.10 | 1.9E-29 | 341 | 446 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-19 | 342 | 444 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.54E-22 | 343 | 444 | No hit | No description |
Pfam | PF02362 | 6.8E-16 | 345 | 444 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 345 | 446 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.7E-21 | 345 | 445 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.17 | 600 | 650 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 4.2E-11 | 605 | 647 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 829 aa Download sequence Send to blast |
MHGVFCFSHS FEHGGFCETF HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM 60 CARKSHAAMA PSQIWSSSMH MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS 120 DLQQRLAFEF DRPSGSEKLL PGRTFIHAHE KKFDDMHDRS TTPAGMNQIM RERYANGHTQ 180 HTTLDPTYAY TLYHREGTNP NLHDHSHHAG ENDHLTARKG VTSDPCSSVS TTFKLDSHHP 240 SILKDDPSAV PAGLSPNFSS ANGPKDHIRI GPTQQQQQMA SSSLQKQFYS HSVIDNDFQA 300 QLRNGRPRMD AKARSQLLPR YWPRITDQEL QHLSGDSNSV ITPLFEKMLS ASDAGRIGRL 360 VLPKKCAEAY FPAISQAEGL PLKVQDATGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ 420 LQAGDTVTFS RIDPEGKLVM GFRKATNLSA EQDQPTKPAN GVPPPPEANN KVVVPDSSPN 480 AAVPRPIKVN TESKSSSPVE QATACKIDKG ALPQKEGPGT SSSSPLPVKR KATSVGPKIK 540 RFRMDSEESM ELKITWEEAQ ELLRPPPKAP SIVVVDGHEF EEYEEPPILG RRTYFVTDQS 600 GENHQWAQCE DCSKWRKLPV DALLPSKWTC SDNKWDSERS SCDSAQEINM EELGEMIPIK 660 PDGLDTLANL AILGEGESLP SQPTTRHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCM 720 TVRRRFRTLM MRREKRQQSE KDSGVPRKRE PGQSSEPVPQ SGSGAHPTST SSPPQRADTN 780 GEGPEDMSID NKRTSSPVKN QIDLNSQPER EDEQSPKSDA TRLLRDNPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 1e-64 | 323 | 447 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 1e-64 | 323 | 447 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 1e-64 | 323 | 447 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 1e-64 | 323 | 447 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 1e-64 | 323 | 447 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 1e-64 | 323 | 447 | 1 | 125 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 1e-64 | 323 | 447 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241199 | 0.0 | AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015647113.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A0D3GSF8 | 0.0 | A0A0D3GSF8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G18780.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-142 | HSI2-like 1 |