PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G18780.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 847aa    MW: 94176.6 Da    PI: 7.8546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G18780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.36.9e-19345444198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  OBART07G18780.1 345 FEKMLSASDAGRIGRLVLPKKCAEAYfpAISQAEGLPLKVQDATGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 436
                      89**************************777788889***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  OBART07G18780.1 437 KLVMGFRK 444
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.40.330.101.9E-29341446IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-19342444IPR015300DNA-binding pseudobarrel domain
CDDcd100174.73E-22343444No hitNo description
PfamPF023627.1E-16345444IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251345446IPR003340B3 DNA binding domain
SMARTSM010195.7E-21345445IPR003340B3 DNA binding domain
PROSITE profilePS5105014.17600650IPR011124Zinc finger, CW-type
PfamPF074964.3E-11605647IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 847 aa     Download sequence    Send to blast
MHGVFCFSHS FEHGGFCETF HLEVAGWRNC ESCGKRLHCG CIVSVHAFVH LDAGGVECVM  60
CARKSHAAMA PSQIWSSSMH MAQNVADRKD NFVKSWRPPA GQFSSQWRQN NMWSMSTMQS  120
DLQQRLAFEF DRPSGSEKLL PGRTFIHAHE KKFDDMHDRS TTPAGMNQIM RERYANGHTQ  180
HTTLDPTYAY TLYHREGTNP NLHDHSHHAG ENDHLTARKG VTSDPCSSVS TTFKLDSHHP  240
SILKDDPSAV PAGLSPNFSS ANGPKDHIRI GPTQQQQQMA SSSLQKQFYS HSVIDNDFQA  300
QLRNGRPRMD AKARSQLLPR YWPRITDQEL QHLSGDSNSV ITPLFEKMLS ASDAGRIGRL  360
VLPKKCAEAY FPAISQAEGL PLKVQDATGK EWVFQFRFWP NNNSRMYVLE GVTPCIQSMQ  420
LQAGDTVTFS RIDPEGKLVM GFRKATNLSA EQDQPTKPAN GVPPPPEANN KVVVPDSSPN  480
AAVPRPIKVN TESKSSSPVE QATACKIDKG ALPQKEGPGT SSSSPLPVKR KATSVGPKIK  540
RFRMDSEESM ELKITWEEAQ ELLRPPPKAP SIVVVDGHEF EEYEEPPILG RRTYFVTDQS  600
GENHQWAQCE DCSKWRKLPV DALLPSKWTC SDNKWDSERS SCDSAQEINM EELGEMIPIK  660
PGAAKKTKGK VDTDNIDVSD GLDTLANLAI LGEGESLPSQ PTTRHPRHRP GCSCIVCIQP  720
PSGKGPKHKQ TCTCNVCMTV RRRFRTLMMR REKRQQSEKD SGVPRKREPG QSSEPVPQSG  780
SGAHPTSTSS PPQRADTNGE GPEDMSIDNK RTSSPVKNQI DLNSQPERED EQSPKSDATR  840
LLRDNPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-643234472126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411990.0AK241199.1 Oryza sativa Japonica Group cDNA, clone: J065121L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D3GSF70.0A0A0D3GSF7_9ORYZ; Uncharacterized protein
STRINGOBART07G18780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-144HSI2-like 1