PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G13980.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LSD | ||||||||
Protein Properties | Length: 284aa MW: 30978.9 Da PI: 10.1595 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 41.9 | 1.6e-13 | 202 | 226 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP+GA+s++Ca+C tV OBART07G13980.2 202 CSGCRNLLMYPAGATSICCAVCGTV 226 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.7E-13 | 199 | 229 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.9E-11 | 202 | 226 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MKAVAAARRG EPYIARLICR RARRQHGRST GATVDLDGSL TRQACHHTVL EPGRPSEGLV 60 LRPSSSSPSR SYKIGITPVN EKRVQPTTSP RSRTGVIVDR AILAEDKKHA PRSESPWLKK 120 PMHGVSGSTA MASTPWSSMP PSSHSLEQMA VLYVTFLREV DVGRGLVALC AHWLKLIVAL 180 LSTSLIYQEV LSSLGAQSQL VCSGCRNLLM YPAGATSICC AVCGTVTAVP APSMHIIHSE 240 QKSSCNVHEN KERLKGNTNG FRAPQRSLEK YTLKLLWSYL HCCV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061509 | 1e-145 | AK061509.1 Oryza sativa Japonica Group cDNA clone:006-309-F08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644598.1 | 5e-57 | protein LOL1 isoform X2 | ||||
Swissprot | Q69UP7 | 5e-58 | LOL1_ORYSJ; Protein LOL1 | ||||
TrEMBL | A0A0D3GQV3 | 0.0 | A0A0D3GQV3_9ORYZ; Uncharacterized protein | ||||
STRING | OBART07G13980.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 8e-16 | lsd one like 1 |
Publications ? help Back to Top | |||
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